Pairwise Alignments

Query, 479 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 464 a.a., Regulatory protein AtoC from Xanthobacter sp. DMC5

 Score =  303 bits (776), Expect = 8e-87
 Identities = 179/485 (36%), Positives = 275/485 (56%), Gaps = 49/485 (10%)

Query: 1   MKMAQSKVLIVEDDEGLREALIDTLALAGYEWLEADCAEDALLKLKSHSVDIVVSDVQMA 60
           M    +K+LIV+D+    E L   LA  G+E +  +    AL    S  VD+V+SD++M 
Sbjct: 1   MPRMAAKILIVDDEVRHGEVLEAALAERGFEAVSTNTVAKALAYCASQPVDLVLSDLRMP 60

Query: 61  GMGGLALLRSIKQHWPNLPVLLMTAYANIQDAVSAMKDGAIDYMAKPFAPEVLLNMVSRY 120
             GG  LLR++K   P LPV++MTAYA+++ AV  +KDGA DY+AKP   + ++  ++R 
Sbjct: 61  DRGGADLLRALKHEQPELPVIIMTAYASVRGAVDLVKDGAFDYVAKPLDLDDVVATIARA 120

Query: 121 APVKSDDNGDAVVADTKSLK---------------LLALADKVAKTDANVMILGPSGSGK 165
             +K+ ++ ++ +      +               +L    +VA + A+V++LG SG+GK
Sbjct: 121 LRLKAVESENSRLRSELEERYRFDNLLGESAVFHHVLRQVTEVAPSRASVLLLGESGTGK 180

Query: 166 EVMSRYIHNASPRKEGPFIAINCAAIPDNMLEATLFGYEKGAFTGAVQACPGKFEQAQGG 225
           E+++R IH  SPR++ PF+A+NCAAIP+ ++E+ LFG+ KGAFTGA     G+F  A  G
Sbjct: 181 ELVARAIHYNSPRRDLPFVAVNCAAIPETLIESELFGHVKGAFTGATGVREGRFAAANQG 240

Query: 226 TILLDEISEMDLNLQAKLLRVLQEREVERLGSRKSIKLDVRVLATSNRDLKQYVQAGHFR 285
           T+ LDEI++M L +QAK+LR LQE+  E +GS KS+ +DVR++A +++DL++ + AG FR
Sbjct: 241 TLFLDEIADMPLPVQAKVLRALQEQSFEPVGSSKSVSVDVRIIAATHKDLQKEIAAGTFR 300

Query: 286 EDLYYRLNVFPLTWPALCERKDDIEPLANHLIERHCKKLGLPVPSIAPNAITKLLNYPWP 345
            DLYYRL VFP+T P L ER DDI  LA+H +    + +G  V  + P A   L  Y WP
Sbjct: 301 MDLYYRLAVFPITLPPLRERTDDIVLLADHFLAAATRDMGKRVKGLTPEAQAMLTRYRWP 360

Query: 346 GNVRELDNVVQRALILSENGHIQSEHILLEGVDWHDASSLQQAVAGESMAAPQIKPVAEP 405
           GNVREL N ++RA I++    +    +LL                         +   + 
Sbjct: 361 GNVRELQNCMERAAIVARGDLVGPGDLLL------------------------FEANGDT 396

Query: 406 EVFKPLVQGGGQNSSSQSSGLGGELRDQEFAIILDTLAECQGRRKEMAEKLGISPRTLRY 465
           +V           S + +  L  EL   E   +L  L +  G +   AEKLGI+ R+L +
Sbjct: 397 DV----------QSHTLNGDLDSELSRIEREFVLQALKDSGGVQARAAEKLGITERSLWH 446

Query: 466 KLAKM 470
           ++ K+
Sbjct: 447 RIKKL 451