Pairwise Alignments

Query, 479 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 441 a.a., C4-dicarboxylate ABC transporter from Pseudomonas simiae WCS417

 Score =  278 bits (712), Expect = 2e-79
 Identities = 155/373 (41%), Positives = 231/373 (61%), Gaps = 24/373 (6%)

Query: 8   VLIVEDDEGLREALIDTLALAGYEWLEADCAEDALLKLKSHSVDIVVSDVQMAGMGGLAL 67
           V++V+D+  +R A+   L+L+G+E      AE+ L +L      +++SDV+M G+ GL L
Sbjct: 5   VIVVDDEASIRTAVEQWLSLSGFEVQLFSRAEECLAQLPKDFPGVILSDVRMPGLSGLEL 64

Query: 68  LRSIKQHWPNLPVLLMTAYANIQDAVSAMKDGAIDYMAKPFAPEVLLNMVSRY------- 120
           L  +++   +LPV+L+T + ++  AV AM+DGA D++ KPF+P+ LLN + R        
Sbjct: 65  LAEVQRRDADLPVILLTGHGDVPMAVEAMRDGAYDFLEKPFSPDALLNSLRRALDKRGLI 124

Query: 121 -------------APVKSDDNGDAVVADTKSLKLLALADKVAKTDANVMILGPSGSGKEV 167
                        A ++S   G +    T   ++L LA        NV+I G +GSGKE+
Sbjct: 125 LENRRLHQQADHRAQLESTLLGVSRGLQTLRRQVLDLAS----LPVNVLIRGETGSGKEL 180

Query: 168 MSRYIHNASPRKEGPFIAINCAAIPDNMLEATLFGYEKGAFTGAVQACPGKFEQAQGGTI 227
           ++R +H+  PR + PF+A+NCAAIP+ + EA LFG+E GAFTGA     GK E A GGT+
Sbjct: 181 VARCLHDFGPRAKKPFVALNCAAIPEQLFEAELFGHESGAFTGAQGKRIGKLEYAHGGTL 240

Query: 228 LLDEISEMDLNLQAKLLRVLQEREVERLGSRKSIKLDVRVLATSNRDLKQYVQAGHFRED 287
            LDEI  M L  Q KLLRVLQE+++ERLGS +SI +D+R++A +  DL +  +AG FRED
Sbjct: 241 FLDEIESMPLAQQVKLLRVLQEQKLERLGSNQSIHVDLRIIAATKPDLLEEARAGRFRED 300

Query: 288 LYYRLNVFPLTWPALCERKDDIEPLANHLIERHCKKLGLPVPSIAPNAITKLLNYPWPGN 347
           L YRLNV  L  P L ER++DI  L +H  +   ++LG  V  ++   + +LL++ WPGN
Sbjct: 301 LAYRLNVAQLRLPPLRERREDIPLLFDHFAQSAAERLGRSVEPLSGAQLGRLLSHDWPGN 360

Query: 348 VRELDNVVQRALI 360
           VREL NV +R ++
Sbjct: 361 VRELANVAERQVL 373