Pairwise Alignments

Query, 479 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 465 a.a., Fis family transcriptional regulator from Pseudomonas simiae WCS417

 Score =  295 bits (755), Expect = 2e-84
 Identities = 182/478 (38%), Positives = 271/478 (56%), Gaps = 41/478 (8%)

Query: 8   VLIVEDDEGLREALIDTLALAGYEWLEADCAEDALLKLKSHSVDIVVSDVQMAGMGGLAL 67
           +L+V+D+  L + L   L     +   A     AL  L+   +D+V+SD +M GM G AL
Sbjct: 5   ILVVDDEPKLCDLLASALGQNDVQVFIAGNGLHALKVLEQEDIDLVISDWRMPGMDGPAL 64

Query: 68  LRSIKQHWPNLPVLLMTAYANIQDAVSAMKDGAIDYMAKPFAPEVLLNMVSRYAPVKS-- 125
           L  IK  +P++PV++MTAY+ +++AV +M++GA DY+AKPF  + L   V++    +   
Sbjct: 65  LAEIKVRYPHVPVIVMTAYSTVKNAVQSMRNGAYDYIAKPFDIDELDITVAKALQFRDIM 124

Query: 126 DDNG------------DAVVADTKSL-KLLALADKVAKTDANVMILGPSGSGKEVMSRYI 172
            DN             D++V D+ +  K+L   D V  + A +++ G SG+GKE+++R I
Sbjct: 125 RDNARLRAELDEHAQFDSLVGDSPAFRKVLQAVDSVRDSSATILLTGESGTGKEMVARAI 184

Query: 173 HNASPRKEGPFIAINCAAIPDNMLEATLFGYEKGAFTGAVQACPGKFEQAQGGTILLDEI 232
           H    R + PF+A+NCAAIP+ +LE+ +FG+ KGAFTGAV    G+F+QA  GT+ LDE+
Sbjct: 185 HKHGSRADKPFVAVNCAAIPEGLLESEMFGHRKGAFTGAVADRVGRFQQADKGTLFLDEV 244

Query: 233 SEMDLNLQAKLLRVLQEREVERLGSRKSIKLDVRVLATSNRDLKQYVQAGHFREDLYYRL 292
            +M L LQAK+LR LQER +E +G  +  K+DVRV+A +N++L   V    FREDLYYRL
Sbjct: 245 GDMPLALQAKILRALQERVIEPVGDPRERKVDVRVIAATNKNLLDAVANKEFREDLYYRL 304

Query: 293 NVFPLTWPALCERKDDIEPLANHLIERHCKKLGLPVPSIAPNAITKLLNYPWPGNVRELD 352
           NVFP+  P+L ER +DI PLA H  +      G  +   +  A+  +  Y WPGN+REL 
Sbjct: 305 NVFPIPLPSLRERVEDIAPLARHFAQTLSATAGKRITGFSAEALQAMAAYHWPGNIRELQ 364

Query: 353 NVVQRALILSENGHIQSEHILLEGVDWHDASSLQQAVAGESMAAPQIKPVAEPEVFKPLV 412
           N V+RA I++ +        ++E +D          + G   A+   KP  + +V   L 
Sbjct: 365 NCVERATIVAASP-------VIEDID----------LPGYLFAS---KP-NQGDVTAILS 403

Query: 413 QGGGQNSSSQSSGLGGELRDQEFAIILDTLAECQGRRKEMAEKLGISPRTLRYKLAKM 470
            G G         L   L + E A IL  L E  G +   A K+GIS R+  Y+L K+
Sbjct: 404 DGPG-----IPQDLDAALAEVEKAYILAALQESNGVQAAAAAKIGISERSFWYRLKKL 456