Pairwise Alignments

Query, 479 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

 Score =  285 bits (729), Expect = 2e-81
 Identities = 171/479 (35%), Positives = 259/479 (54%), Gaps = 63/479 (13%)

Query: 8   VLIVEDDEGLREALIDTLALAGYEWLEADCAEDALLKLKSHSVDIV-VSDVQMAGMGGLA 66
           V +++D+  +R AL  +  LA          E+ALL +K+  + +V VSD+ + G+ G  
Sbjct: 4   VFLIDDESDIRIALAQSFELADLNAQFFASVEEALLAIKAQGLPLVIVSDICLPGLSGQN 63

Query: 67  LLRSIKQHWPNLPVLLMTAYANIQDAVSAMKDGAIDYMAKPFAPEVLLNMVSRYAPVK-- 124
           LL S+      LPV+L+T + +I  AV AM DGA D++ KPFAPE L++ V R    +  
Sbjct: 64  LLSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVHRAIEKRRL 123

Query: 125 -------------SDDNGDAVVADTKSLKLLA-LADKVAKTDANVMILGPSGSGKEVMSR 170
                        S   G  ++ +T +++ L     +VA T A++++ G +G+GKE+++R
Sbjct: 124 TLENRQLKRSLKVSQTLGPRIIGETAAIQTLRDTIAQVADTQADILLFGETGTGKELVAR 183

Query: 171 YIHNASPRKEGPFIAINCAAIPDNMLEATLFGYEKGAFTGAVQACPGKFEQAQGGTILLD 230
            +H  S R+E  F+AINC A+P+N++E+ L+G+EKGAFTGA     GKFE AQGGT+ LD
Sbjct: 184 SLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGADSRRVGKFEHAQGGTLFLD 243

Query: 231 EISEMDLNLQAKLLRVLQEREVERLGSRKSIKLDVRVLATSNRDLKQYVQAGHFREDLYY 290
           EI  M +  Q +LLRVLQER +ER+GS + I LD+RV+A +  DLKQ    G FR+DLYY
Sbjct: 244 EIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQAAAEGKFRQDLYY 303

Query: 291 RLNVFPLTWPALCERKDDIEPLANHLIERHCKKLGLPVPSIAPNAITKLLNYPWPGNVRE 350
           RLN+  LT P L ER++DI  L +H +     + G    ++  + +  LL++ WPGNVRE
Sbjct: 304 RLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDVQSLLSHDWPGNVRE 363

Query: 351 LDNVVQRALILSENGHIQSEHILLEGVDWHDASSLQQAVAGESMAAPQIKPVAEPEVFKP 410
           L N  +R ++L +       H                                EP+    
Sbjct: 364 LRNAAERYVLLGKLAQFAESH--------------------------------EPK---- 387

Query: 411 LVQGGGQNSSSQSSGLGGELRDQEFAIILDTLAECQGRRKEMAEKLGISPRTLRYKLAK 469
                     S+  GL  ++ + E +++  TL EC G  K   E+L +  +TL  K+ K
Sbjct: 388 ----------SKLLGLNEQVAEFEKSLLEQTLIECGGSIKATMERLHLPRKTLYDKMQK 436