Pairwise Alignments

Query, 479 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 480 a.a., Nitrogen regulation protein NR(I) from Pseudomonas putida KT2440

 Score =  290 bits (741), Expect = 1e-82
 Identities = 169/400 (42%), Positives = 242/400 (60%), Gaps = 36/400 (9%)

Query: 8   VLIVEDDEGLREALIDTLALAGYEWLEADCAEDALLKLKSHSVDIVVSDVQMAGMGGLAL 67
           +LIVED+  +R AL   L    Y+  EA   ++A  +    + D++VSD+++ G  G  L
Sbjct: 4   ILIVEDETIIRSALRRLLERNQYQVSEAGSVQEAQERFSIATFDLIVSDLRLPGAPGTEL 63

Query: 68  LRSIKQHWPNLPVLLMTAYANIQDAVSAMKDGAIDYMAKPFAPEVLLNMVSRY------A 121
           ++  +      PVL+MT+YA+++ AV +MK GA+DY+AKPF  + +L  V+R       A
Sbjct: 64  IKLGQ----GTPVLIMTSYASLRSAVDSMKMGAVDYIAKPFDHDEMLQAVARILRDRQNA 119

Query: 122 PVKSD------DNGDAVVADTKSLK-----------------LLALADKVAKTDANVMIL 158
           P  +        NG A  +D  S                   + +   KVA TD+NV+I 
Sbjct: 120 PAAAPPAEPRASNGKATASDKGSAATANGEIGIIGSCQPMQDMYSKIRKVAPTDSNVLIQ 179

Query: 159 GPSGSGKEVMSRYIHNASPRKEGPFIAINCAAIPDNMLEATLFGYEKGAFTGAVQACPGK 218
           G SG+GKE+++R +HN S R + P I++NCAAIP+ ++E+ LFG+EKGAFTGA     G 
Sbjct: 180 GESGTGKELVARALHNLSRRAKAPMISVNCAAIPETLIESELFGHEKGAFTGASAGRAGL 239

Query: 219 FEQAQGGTILLDEISEMDLNLQAKLLRVLQEREVERLGSRKSIKLDVRVLATSNRDLKQY 278
            E A GGT+ LDEI E+ L  QA+LLRVLQE E+ R+GS +S K+DVR++A ++RDLK  
Sbjct: 240 VEAADGGTLFLDEIGELPLEAQARLLRVLQEGEIRRVGSVQSQKVDVRLIAATHRDLKNL 299

Query: 279 VQAGHFREDLYYRLNVFPLTWPALCERKDDIEPLANHLIERHCKKLGLPVPSIAPNAITK 338
            +AG FREDLYYRL+V  L  PAL ER  D+  +AN  + R   ++G      +  A   
Sbjct: 300 AKAGQFREDLYYRLHVIALKLPALRERGSDVNEIANVFLARQSARIGRDDLHFSAEAEQA 359

Query: 339 LLNYPWPGNVRELDNVVQRALILSENGHIQSEHILLEGVD 378
           + +Y WPGNVREL+N V+RA+ILSE+  I +E   L G+D
Sbjct: 360 IRHYSWPGNVRELENAVERAVILSESAEISAE---LLGID 396