Pairwise Alignments

Query, 479 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 451 a.a., two component system AtoC DNA-binding transcriptional activator from Pseudomonas putida KT2440

 Score =  456 bits (1174), Expect = e-133
 Identities = 251/471 (53%), Positives = 315/471 (66%), Gaps = 29/471 (6%)

Query: 7   KVLIVEDDEGLREALIDTLALAGYEWLEADCAEDALLKLKSHSVDIVVSDVQMAGMGGLA 66
           KVL+VEDD  LR+AL DTL + G+ +     AE+AL  +   +  +VVSDV M GM G  
Sbjct: 4   KVLLVEDDRVLRQALGDTLEIGGFAYQAVGSAEEALEAVLEDAFSLVVSDVNMPGMDGHQ 63

Query: 67  LLRSIKQHWPNLPVLLMTAYANIQDAVSAMKDGAIDYMAKPFAPEVLLNMVSRYAPVKSD 126
           LL  +++  P LPVLLMTA+A ++ AV AM+ GA DY+ KPF P+ LLN+V R+A  +  
Sbjct: 64  LLSQLRRQQPQLPVLLMTAHAAVERAVEAMRQGAADYLVKPFEPKALLNLVERHAAGRVT 123

Query: 127 DNGDAVVADTKSLKLLALADKVAKTDANVMILGPSGSGKEVMSRYIHNASPRKEGPFIAI 186
                V  +  S +LL LA +VA++D+ V+I G SG+GKEV++RYIH  SPR   PF+AI
Sbjct: 124 GEEGPVACEPASRQLLELAARVARSDSTVLISGESGTGKEVLARYIHQQSPRAAQPFVAI 183

Query: 187 NCAAIPDNMLEATLFGYEKGAFTGAVQACPGKFEQAQGGTILLDEISEMDLNLQAKLLRV 246
           NCAAIPDNMLEATLFG+EKGAFTGA+ A  GKFEQA+GGT+LLDEISEM + LQAKLLRV
Sbjct: 184 NCAAIPDNMLEATLFGHEKGAFTGAIAAQAGKFEQAEGGTLLLDEISEMPMALQAKLLRV 243

Query: 247 LQEREVERLGSRKSIKLDVRVLATSNRDLKQYVQAGHFREDLYYRLNVFPLTWPALCERK 306
           LQEREVER+G RK I LD+RVLAT+NRDL   V AG FREDLYYRL+VFPL W  L ER 
Sbjct: 244 LQEREVERVGGRKPISLDIRVLATTNRDLAGEVAAGRFREDLYYRLSVFPLAWRPLRERP 303

Query: 307 DDIEPLANHLIERHCKKLGLPVPSIAPNAITKLLNYPWPGNVRELDNVVQRALILSENGH 366
            DI  LA  L+ RH  K+      ++P A   L  Y WPGNVRELDN +QRALIL + G 
Sbjct: 304 GDILQLAERLLARHVAKMKHASVRLSPAARACLQAYAWPGNVRELDNALQRALILQQGGV 363

Query: 367 IQSEHILLEGVDWHDASSLQQAVAGESMAAPQIKPVAEPEVFKPLVQGGGQNSSSQSSGL 426
           I++    L G           A+   +   P ++ VA+                  + GL
Sbjct: 364 IEAADFCLAG-----------AIPLSAGTEPSLEVVAD------------------AGGL 394

Query: 427 GGELRDQEFAIILDTLAECQGRRKEMAEKLGISPRTLRYKLAKMRDAGIDI 477
           G ++R  E+ +I+DTL   +GRRKE AE+LGISPRTLRYKLA+MRDAG D+
Sbjct: 395 GDDMRRHEYQMIIDTLRAERGRRKEAAERLGISPRTLRYKLAQMRDAGFDV 445