Pairwise Alignments

Query, 479 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 475 a.a., Sigma-54 dependent transcriptional regulator/response regulator from Pseudomonas putida KT2440

 Score =  284 bits (727), Expect = 4e-81
 Identities = 178/489 (36%), Positives = 270/489 (55%), Gaps = 48/489 (9%)

Query: 5   QSKVLIVEDDEGLREALIDTLALAGYEWLEADCAEDALLKLKSHSVDIVVSDVQMAGMGG 64
           +  +L+VEDDE L + +   L+L GYE +    AE AL ++K    D V++D  + GM G
Sbjct: 2   EHSILVVEDDEILADNIRTYLSLKGYEVIVCHSAELALEQIKRAQPDAVLTDNSLPGMSG 61

Query: 65  LALLRSIKQHWPNLPVLLMTAYANIQDAVSAMKDGAIDYMAKP-------------FAPE 111
             LLR++    P+L V++MT Y N++DAV AMK+GA  Y+ KP              A E
Sbjct: 62  HDLLRTLVAQAPDLKVIMMTGYGNVEDAVQAMKEGAFHYLTKPVVLAELKLTLDKALATE 121

Query: 112 VLLNMVSRYAPVKSDDNG-DAVVADTKSL--------KLLALADKVAKTDAN-VMILGPS 161
            +   +S Y   ++  +G  A++ ++  +        ++L    ++A  D   V+I G +
Sbjct: 122 RMERTLSFYQEREAQKSGLQALIGESPVMLTLKHTLRQVLDAERRMASDDLPPVLIEGET 181

Query: 162 GSGKEVMSRYIHNASPRKEGPFIAINCAAIPDNMLEATLFGYEKGAFTGAVQACPGKFEQ 221
           G+GKE+++R +H    R +GPFI  NCA+IP N+LEA LFG+EKGAFT A +   G  E 
Sbjct: 182 GTGKELVARALHFDGSRSKGPFIEFNCASIPANLLEAELFGHEKGAFTDAKERRVGLVEA 241

Query: 222 AQGGTILLDEISEMDLNLQAKLLRVLQEREVERLGSRKSIKLDVRVLATSNRDLKQYVQA 281
           A GGT+ LDEI EMDL LQAKLL++L++R + R+G+ K  K+D+RV++ +N +L+Q VQ 
Sbjct: 242 ADGGTLFLDEIGEMDLVLQAKLLKLLEDRSIRRIGAVKERKVDLRVISATNCNLEQMVQQ 301

Query: 282 GHFREDLYYRLNVFPLTWPALCERKDDIEPLANHLIERHCKKLGLPVPSIAPNAITKLLN 341
           G FR DL++RL +  L  P L  R  DI  LA H +  H ++ G P    +  A + LL 
Sbjct: 302 GKFRRDLFFRLRIIALKVPRLYSRGQDILLLARHFLAHHSRRYGKPNLRFSAEAESLLLG 361

Query: 342 YPWPGNVRELDNVVQRALILSENGHIQSEHILLEGVDWHDASSLQQAVAGESMAAPQIKP 401
           Y WPGNVREL N++++ ++L+ N  +Q+  + L        + + + +A + MAA    P
Sbjct: 362 YSWPGNVRELRNMLEQTVLLAPNEVVQAHQLNL------CMTLVDEPLAQQPMAAMFEMP 415

Query: 402 VAEPEVFKPLVQGGGQNSSSQSSGLGGELRDQEFAIILDTLAECQGRRKEMAEKLGISPR 461
             EPE                    G  L D E  ++  TL        + A  LG+S  
Sbjct: 416 RHEPEP-------------------GTSLPDMERDLVCKTLDRTDWNVTKSARMLGLSRD 456

Query: 462 TLRYKLAKM 470
            LRY++ K+
Sbjct: 457 MLRYRIEKL 465