Pairwise Alignments

Query, 479 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 442 a.a., C4-dicarboxylate transport transcriptional regulatory protein from Pseudomonas putida KT2440

 Score =  275 bits (702), Expect = 3e-78
 Identities = 156/373 (41%), Positives = 221/373 (59%), Gaps = 16/373 (4%)

Query: 1   MKMAQSKVLIVEDDEGLREALIDTLALAGYEWLEADCAEDALLKLKSHSVDIVVSDVQMA 60
           M  A   VLIVEDD  +       LAL          AE AL ++      IVVSD+++ 
Sbjct: 1   MNQAPLTVLIVEDDPHVLLGCQQALALEDIACEGVGSAEQALERIGDDFAGIVVSDIRLP 60

Query: 61  GMGGLALLRSIKQHWPNLPVLLMTAYANIQDAVSAMKDGAIDYMAKPFAPEVLLNMVSRY 120
           G+ GL LL  +K    +LPV+L+T + +I  AV AM++GA D+M KPF+PE L+++V R 
Sbjct: 61  GIDGLELLNRLKARDRSLPVVLITGHGDIDMAVGAMRNGAYDFMEKPFSPERLVDVVRRA 120

Query: 121 APVKSDDNGDAVV----ADTKSLK------------LLALADKVAKTDANVMILGPSGSG 164
              +        +    A+  SL+            L  L   VA T ANV+I G +G+G
Sbjct: 121 LEQRGLSREVVALRRQLAEQSSLEGRIIGRSPAMEHLRELIANVADTSANVLIEGETGTG 180

Query: 165 KEVMSRYIHNASPRKEGPFIAINCAAIPDNMLEATLFGYEKGAFTGAVQACPGKFEQAQG 224
           KE+++R +H+ S R+  PF+A+NC  +P+N+ E+ +FG+E  AFTGA +   GK E A G
Sbjct: 181 KELVARCLHDFSRRQSHPFVALNCGGLPENLFESEIFGHEANAFTGAGKRRIGKIEHANG 240

Query: 225 GTILLDEISEMDLNLQAKLLRVLQEREVERLGSRKSIKLDVRVLATSNRDLKQYVQAGHF 284
           GT+ LDE+  M +NLQ KLLRVLQER +ERLGS +SI +D RV+A +  DL    Q+G F
Sbjct: 241 GTLFLDEVESMPINLQIKLLRVLQERTLERLGSNQSIPVDCRVIAATKADLDALGQSGQF 300

Query: 285 REDLYYRLNVFPLTWPALCERKDDIEPLANHLIERHCKKLGLPVPSIAPNAITKLLNYPW 344
           R DLYYRLNV  L  P L ER++DI  L  H +++   +     P++    +++L+ + W
Sbjct: 301 RSDLYYRLNVVTLELPPLRERREDILQLFEHFLQQSALRFDRETPTLDSQTLSRLMAHDW 360

Query: 345 PGNVRELDNVVQR 357
           PGNVREL NV +R
Sbjct: 361 PGNVRELRNVAER 373