Pairwise Alignments

Query, 479 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 478 a.a., Transcriptional regulatory protein ZraR from Pseudomonas lactucae CFBP13502

 Score =  288 bits (737), Expect = 3e-82
 Identities = 188/484 (38%), Positives = 266/484 (54%), Gaps = 57/484 (11%)

Query: 8   VLIVEDDEGLREALIDTLALAGYEWLEADCAEDALLKLKSHSVDIVVSDVQMAGMGGLAL 67
           +LIVED+  +R AL   L    Y+  EA   ++A  +    + D++VSD+++ G  G  L
Sbjct: 4   ILIVEDETIIRSALRRLLERNQYQVSEAGSVQEAQERFSIPTFDLIVSDLRLPGAPGTEL 63

Query: 68  LRSIKQHWPNLPVLLMTAYANIQDAVSAMKDGAIDYMAKPFAPEVLLNMVSRY------- 120
           ++  +      PVL+MT+YA+++ AV +MK GA+DY+AKPF  + +L  V+R        
Sbjct: 64  IKLGQ----GTPVLIMTSYASLRSAVDSMKMGAVDYIAKPFDHDEMLQAVARILRDRQSA 119

Query: 121 --APVKSDDNGDAVVADTK------------------SLKLLALADKVAKTDANVMILGP 160
             AP +    G    A  K                     L     KVA TD+NV+I G 
Sbjct: 120 SSAPAEQRPAGKTASAADKPGVDNSNGEIGIIGSCPPMQDLYGKIRKVAPTDSNVLIQGE 179

Query: 161 SGSGKEVMSRYIHNASPRKEGPFIAINCAAIPDNMLEATLFGYEKGAFTGAVQACPGKFE 220
           SG+GKE+++R +HN S R + P I++NCAAIP++++E+ LFG+EKGAFTGA     G  E
Sbjct: 180 SGTGKELVARALHNLSKRAKAPMISVNCAAIPESLIESELFGHEKGAFTGASAGRAGLVE 239

Query: 221 QAQGGTILLDEISEMDLNLQAKLLRVLQEREVERLGSRKSIKLDVRVLATSNRDLKQYVQ 280
            A GGT+ LDEI E+ L  QA+LLRVLQE E+ R+GS +S K+DVR++A ++RDLK   +
Sbjct: 240 AADGGTLFLDEIGELPLEAQARLLRVLQEGEIRRVGSVQSQKVDVRLIAATHRDLKSLAK 299

Query: 281 AGHFREDLYYRLNVFPLTWPALCERKDDIEPLANHLIERHCKKLGLPVPSIAPNAITKLL 340
            G FREDLYYRL+V  L  PAL ER  D+  +A   + R   ++       AP+A   + 
Sbjct: 300 IGQFREDLYYRLHVIALKLPALRERGADVNEIAQAFLLRQSARINRTDLKFAPDAEQAIR 359

Query: 341 NYPWPGNVRELDNVVQRALILSENGHIQSEHILLEGVDWHDASSLQQAVAGESMAAPQIK 400
           +Y WPGNVREL+N V+RA+ILSE+  I +E   L G+D   +        G    APQ  
Sbjct: 360 HYSWPGNVRELENAVERAVILSESPEISAE---LLGIDIELSDLEDDDFIG---LAPQ-- 411

Query: 401 PVAEPEVFKPLVQGGGQNSSSQSSGLGGELRDQEFAI-ILDTLAECQGRRKEMAEKLGIS 459
                       QGG   S   +  L  E   Q F +   D + E      E+A KLG+S
Sbjct: 412 ------------QGGSNTSHEPTEDLSLEDYFQHFVLEHQDHMTE-----TELARKLGVS 454

Query: 460 PRTL 463
            + L
Sbjct: 455 RKCL 458