Pairwise Alignments

Query, 479 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 476 a.a., sigma-54-dependent Fis family transcriptional regulator from Pseudomonas fluorescens SBW25

 Score =  291 bits (746), Expect = 3e-83
 Identities = 189/482 (39%), Positives = 276/482 (57%), Gaps = 55/482 (11%)

Query: 8   VLIVEDDEGLREALIDTLALAGYEWLEADCAEDALLKLKSHSVDIVVSDVQMAGMGGLAL 67
           +LIVED+  +R AL   L    Y+  EA   ++A  +    + D++VSD+++ G  G  L
Sbjct: 4   ILIVEDETIIRSALRRLLERNQYQVSEAGSVQEAQERFSIPTFDLIVSDLRLPGAPGTEL 63

Query: 68  LRSIKQHWPNLPVLLMTAYANIQDAVSAMKDGAIDYMAKPFAPEVLLNMVSRY------- 120
           ++  +      PVL+MT+YA+++ AV +MK GA+DY+AKPF  + +L  V+R        
Sbjct: 64  IKLGQ----GTPVLIMTSYASLRSAVDSMKMGAVDYIAKPFDHDEMLQAVARILRDRQSA 119

Query: 121 --APVKSDDNGDA--------------VVADTKSLK-LLALADKVAKTDANVMILGPSGS 163
             APV+    G A              ++     ++ L +   KVA TD+NV+I G SG+
Sbjct: 120 SSAPVEQRPAGKAADKPGVDNSNGEIGIIGSCPPMQDLYSKIRKVAPTDSNVLIQGESGT 179

Query: 164 GKEVMSRYIHNASPRKEGPFIAINCAAIPDNMLEATLFGYEKGAFTGAVQACPGKFEQAQ 223
           GKE+++R +HN S R + P I++NCAAIP++++E+ LFG+EKGAFTGA     G  E A 
Sbjct: 180 GKELVARALHNLSKRAKAPMISVNCAAIPESLIESELFGHEKGAFTGASAGRAGLVEAAD 239

Query: 224 GGTILLDEISEMDLNLQAKLLRVLQEREVERLGSRKSIKLDVRVLATSNRDLKQYVQAGH 283
           GGT+ LDEI E+ L  QA+LLRVLQE E+ R+GS +S K+DVR++A ++RDLK   + G 
Sbjct: 240 GGTLFLDEIGELPLEAQARLLRVLQEGEIRRVGSVQSQKVDVRLIAATHRDLKSLAKIGQ 299

Query: 284 FREDLYYRLNVFPLTWPALCERKDDIEPLANHLIERHCKKLGLPVPSIAPNAITKLLNYP 343
           FREDLYYRL+V  L  PAL ER  D+  +A+  + R   ++       AP+A   + +Y 
Sbjct: 300 FREDLYYRLHVIALKLPALRERGADVNEIASAFLLRQSARINRTDLKFAPDAEQAIRHYS 359

Query: 344 WPGNVRELDNVVQRALILSENGHIQSEHILLEGVDWHDASSLQQAVAGESMAAPQIKPVA 403
           WPGNVREL+N V+RA+ILSE+  I +E   L G+D   +   +    G    APQ     
Sbjct: 360 WPGNVRELENAVERAVILSESPEISAE---LLGIDIELSDLEEDDFIG---LAPQ----- 408

Query: 404 EPEVFKPLVQGGGQNSSSQ-SSGLGGELRDQEFAI-ILDTLAECQGRRKEMAEKLGISPR 461
                     GGG N+S + +  L  E   Q F +   D + E      E+A KLG+S +
Sbjct: 409 ---------HGGGSNTSHEPTEDLSLEDYFQHFVLEHQDHMTE-----TELARKLGVSRK 454

Query: 462 TL 463
            L
Sbjct: 455 CL 456