Pairwise Alignments

Query, 479 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 469 a.a., Nitrogen regulation protein NR(I) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  279 bits (714), Expect = 1e-79
 Identities = 168/483 (34%), Positives = 270/483 (55%), Gaps = 32/483 (6%)

Query: 3   MAQSKVLIVEDDEGLREALIDTLALAGYEWLEADCAEDALLKLKSHSVDIVVSDVQMAGM 62
           M +  V +V+DD  +R  L   LA AG      +   + L  L S + D+++SD++M GM
Sbjct: 1   MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTPDVLLSDIRMPGM 60

Query: 63  GGLALLRSIKQHWPNLPVLLMTAYANIQDAVSAMKDGAIDYMAKPFAPEVLLNMVSR--- 119
            GLALL+ IKQ  P LPV++MTA++++  AVSA + GA DY+ KPF  +  + +V R   
Sbjct: 61  DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120

Query: 120 -----YAPVKSDDNGDA--VVADTKSLK-LLALADKVAKTDANVMILGPSGSGKEVMSRY 171
                  P   + NG    ++ +  +++ +  +  +++++  +V+I G SG+GKE+++  
Sbjct: 121 HYQEQQQPRNIEVNGPTTDMIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180

Query: 172 IHNASPRKEGPFIAINCAAIPDNMLEATLFGYEKGAFTGAVQACPGKFEQAQGGTILLDE 231
           +H  SPR + PFIA+N AAIP +++E+ LFG+EKGAFTGA     G+FEQA GGT+ LDE
Sbjct: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240

Query: 232 ISEMDLNLQAKLLRVLQEREVERLGSRKSIKLDVRVLATSNRDLKQYVQAGHFREDLYYR 291
           I +M L++Q +LLRVL + +  R+G    +K+DVR++A ++++L++ VQ G FREDL++R
Sbjct: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLERRVQEGKFREDLFHR 300

Query: 292 LNVFPLTWPALCERKDDIEPLANHLIERHCKKLGLPVPSIAPNAITKLLNYPWPGNVREL 351
           LNV  +  P L ER++DI  LA H ++   ++LG+    + P   T L    WPGNVR+L
Sbjct: 301 LNVIRIHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETETALTRLAWPGNVRQL 360

Query: 352 DNVVQRALILSENGHIQSEHILLEGVDWHDASSLQQAVAGESMAA--PQIKPVAEPEVFK 409
           +N  +   +++    +                 L Q + GE   A  P       P+ + 
Sbjct: 361 ENTCRWLTVMAAGQEV-----------------LIQDLPGELFEASTPDSPSHLPPDSWA 403

Query: 410 PLVQGGGQNS--SSQSSGLGGELRDQEFAIILDTLAECQGRRKEMAEKLGISPRTLRYKL 467
            L+      +  S   + L     + E  ++   L   QG ++E A  LG    TL  KL
Sbjct: 404 TLLAQWADRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKL 463

Query: 468 AKM 470
            ++
Sbjct: 464 KEL 466