Pairwise Alignments

Query, 479 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 441 a.a., fused DNA-binding response regulator in two-component regulatory system with ZraS: response regulator/sigma54 interaction protein (NCBI) from Escherichia coli BW25113

 Score =  288 bits (736), Expect = 3e-82
 Identities = 172/472 (36%), Positives = 266/472 (56%), Gaps = 48/472 (10%)

Query: 8   VLIVEDDEGLREALIDTLALAGYEWLEADCAEDALLKLKSHSVDIVVSDVQMAGMGGLAL 67
           +L+V+DD      L   L   GY    A+    AL +++    D+V+ DV+MA M G+A 
Sbjct: 8   ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67

Query: 68  LRSIKQHWPNLPVLLMTAYANIQDAVSAMKDGAIDYMAKPFAPEVL----------LNMV 117
           L+ IK   P +PVL+MTAY++++ AV A+K GA+DY+ KP   + L           + +
Sbjct: 68  LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127

Query: 118 SRYAPVKSDDNGDAVVADTKSLKLLALADKVAKTDANVMILGPSGSGKEVMSRYIHNASP 177
               P  +      V        LL+    VA ++A V+I G SG+GKE+++R IH +S 
Sbjct: 128 DAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSA 187

Query: 178 RKEGPFIAINCAAIPDNMLEATLFGYEKGAFTGAVQACPGKFEQAQGGTILLDEISEMDL 237
           R E P + +NCAA+ +++LE+ LFG+EKGAFTGA +   G+F +A GGT+ LDEI ++  
Sbjct: 188 RSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISP 247

Query: 238 NLQAKLLRVLQEREVERLGSRKSIKLDVRVLATSNRDLKQYVQAGHFREDLYYRLNVFPL 297
            +Q +LLR +QEREV+R+GS + I +DVR++A ++RDL   V AG FR+DLYYRLNV  +
Sbjct: 248 MMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVAI 307

Query: 298 TWPALCERKDDIEPLANHLIERHCKKLGLPVPSIAPNAITKLLNYPWPGNVRELDNVVQR 357
             P+L +R++DI  LA H ++R  ++    V    P A+  L++Y WPGN+REL+N V+R
Sbjct: 308 EVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVER 367

Query: 358 ALILSENGHIQSEHILLEGVDWHDASSLQQAVAGESMAAPQIKPVAEPEVFKPLVQGGGQ 417
           A++L    +I    + L             A+A   +      P+ + +  +PLV     
Sbjct: 368 AVVLLTGEYISERELPL-------------AIASTPI------PLGQSQDIQPLV----- 403

Query: 418 NSSSQSSGLGGELRDQEFAIILDTLAECQGRRKEMAEKLGISPRTLRYKLAK 469
                         + E  +IL  L +  G + E A +LGI+ +TL  KL++
Sbjct: 404 --------------EVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441