Pairwise Alignments

Query, 479 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 444 a.a., predicted DNA-binding response regulator in two-component system (NCBI) from Escherichia coli BW25113

 Score =  291 bits (746), Expect = 2e-83
 Identities = 162/402 (40%), Positives = 247/402 (61%), Gaps = 18/402 (4%)

Query: 1   MKMAQSKVLIVEDDEGLREALIDTLALAGYEWLEADCAEDALLKLKSHSVDIVVSDVQMA 60
           M    + +L+V+DD GL + L   L   GY  + A+   + L  L    VD+V+SD++M 
Sbjct: 1   MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60

Query: 61  GMGGLALLRSIKQHWPNLPVLLMTAYANIQDAVSAMKDGAIDYMAKPFAPEVLLNMVS-- 118
            M G+ L   I++  P +PV+++TA+ +I DAV+A + G   ++ KP   + L   +   
Sbjct: 61  EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120

Query: 119 --RYAPVKSDDNGDAVVADTK-SLKLLALADKVAKTDANVMILGPSGSGKEVMSRYIHNA 175
             + AP   +   +A+V  +   L+LL  A  VA++D +V+I G SG+GKE+ ++ IHNA
Sbjct: 121 LEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNA 180

Query: 176 SPRKEGPFIAINCAAIPDNMLEATLFGYEKGAFTGAVQACPGKFEQAQGGTILLDEISEM 235
           SPR   PFIAINC A+P+ +LE+ LFG+ +GAFTGAV    G F+ A+GGT+ LDEI +M
Sbjct: 181 SPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDM 240

Query: 236 DLNLQAKLLRVLQEREVERLGSRKSIKLDVRVLATSNRDLKQYVQAGHFREDLYYRLNVF 295
              LQ KLLRVLQER+V  LGS + I ++VR+++ ++RDL + +  G FREDLYYRLNV 
Sbjct: 241 PAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVV 300

Query: 296 PLTWPALCERKDDIEPLANHLIERHCKKLGLPVPSIAPNAITKLLNYPWPGNVRELDNVV 355
            L  PAL ER +DI  LANHL+ +  ++    V + + +A+ +L+   WPGNVR+L NV+
Sbjct: 301 SLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVI 360

Query: 356 QRALILSENGHIQSEHILLEGVDWHDASSLQQAVAGESMAAP 397
           ++ + L+ +  I               + ++QA+ GE+ A P
Sbjct: 361 EQCVALTSSPVISD-------------ALVEQALEGENTALP 389