Pairwise Alignments

Query, 479 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 445 a.a., Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains from Enterobacter asburiae PDN3

 Score =  288 bits (736), Expect = 3e-82
 Identities = 158/395 (40%), Positives = 245/395 (62%), Gaps = 18/395 (4%)

Query: 8   VLIVEDDEGLREALIDTLALAGYEWLEADCAEDALLKLKSHSVDIVVSDVQMAGMGGLAL 67
           +L+V+DD GL + L   L   GY  + A+  ++ L  L    +D+V+SD++M  M GL L
Sbjct: 9   LLLVDDDPGLLKLLGMRLVSEGYSVVTAESGQEGLKILTREKIDLVISDLRMDEMDGLQL 68

Query: 68  LRSIKQHWPNLPVLLMTAYANIQDAVSAMKDGAIDYMAKPFAPEVLLNMVS----RYAPV 123
              I++  P +PV+++TA+ +I DAV+A + G   ++ KP   + L   +       AP 
Sbjct: 69  FAEIQKQQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYKAIDSALEHAAPA 128

Query: 124 KSDDNGDAVVADTK-SLKLLALADKVAKTDANVMILGPSGSGKEVMSRYIHNASPRKEGP 182
             +   +++V  +   L+LL  A  VA++D +V+I G SG+GKE++++ IHNASPR +  
Sbjct: 129 GDEAWRESIVTRSPIMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNASPRSKNA 188

Query: 183 FIAINCAAIPDNMLEATLFGYEKGAFTGAVQACPGKFEQAQGGTILLDEISEMDLNLQAK 242
           FIAINC A+P+ +LE+ LFG+ +GAFTGAV +  G F+ A+GGT+ LDEI +M   LQ K
Sbjct: 189 FIAINCGALPEQLLESELFGHARGAFTGAVSSREGLFQAAEGGTLFLDEIGDMPAPLQVK 248

Query: 243 LLRVLQEREVERLGSRKSIKLDVRVLATSNRDLKQYVQAGHFREDLYYRLNVFPLTWPAL 302
           LLRVLQER+V  LGS + I ++VR+++ ++RDL + +    FREDLYYRLNV  L  PAL
Sbjct: 249 LLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKVMARNEFREDLYYRLNVVNLKIPAL 308

Query: 303 CERKDDIEPLANHLIERHCKKLGLPVPSIAPNAITKLLNYPWPGNVRELDNVVQRALILS 362
            ER +DI  LANHL+ +   +    V + + +A+ +L+   WPGNVR+L NV+++ + L+
Sbjct: 309 AERAEDIPLLANHLLRQAADRHKPFVRAFSTDAMKRLMAAGWPGNVRQLVNVIEQCVALT 368

Query: 363 ENGHIQSEHILLEGVDWHDASSLQQAVAGESMAAP 397
            +  I               + ++QA+ GE+ A P
Sbjct: 369 SSPVISD-------------ALVEQALEGENTALP 390