Pairwise Alignments

Query, 479 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 469 a.a., nitrogen regulation protein NR(I) from Escherichia coli ECRC62

 Score =  279 bits (714), Expect = 1e-79
 Identities = 168/483 (34%), Positives = 277/483 (57%), Gaps = 32/483 (6%)

Query: 3   MAQSKVLIVEDDEGLREALIDTLALAGYEWLEADCAEDALLKLKSHSVDIVVSDVQMAGM 62
           M +  V +V+DD  +R  L   LA AG      +   + L  L S + D+++SD++M GM
Sbjct: 1   MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60

Query: 63  GGLALLRSIKQHWPNLPVLLMTAYANIQDAVSAMKDGAIDYMAKPFAPEVLLNMVSR--- 119
            GLALL+ IKQ  P LPV++MTA++++  AVSA + GA DY+ KPF  +  + +V R   
Sbjct: 61  DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120

Query: 120 -----YAPVKSDDNGDA--VVADTKSLK-LLALADKVAKTDANVMILGPSGSGKEVMSRY 171
                  P     NG    ++ +  +++ +  +  +++++  +V+I G SG+GKE+++  
Sbjct: 121 HYQEQQQPRNIQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180

Query: 172 IHNASPRKEGPFIAINCAAIPDNMLEATLFGYEKGAFTGAVQACPGKFEQAQGGTILLDE 231
           +H  SPR + PFIA+N AAIP +++E+ LFG+EKGAFTGA     G+FEQA GGT+ LDE
Sbjct: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240

Query: 232 ISEMDLNLQAKLLRVLQEREVERLGSRKSIKLDVRVLATSNRDLKQYVQAGHFREDLYYR 291
           I +M L++Q +LLRVL + +  R+G    +K+DVR++A ++++L+Q VQ G FREDL++R
Sbjct: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300

Query: 292 LNVFPLTWPALCERKDDIEPLANHLIERHCKKLGLPVPSIAPNAITKLLNYPWPGNVREL 351
           LNV  +  P L ER++DI  LA H ++   ++LG+    + P     L    WPGNVR+L
Sbjct: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQL 360

Query: 352 DNVVQRALILSENGHIQSEHILLEGVDWHDASSLQQAVAGESMAAPQIKPVAEPEVFKP- 410
           +N  +   +++       + +L++ +       L ++   ES +  Q++P +   +    
Sbjct: 361 ENTCRWLTVMA-----AGQEVLIQDL----PGELFESTVAESTS--QMQPDSWATLLAQW 409

Query: 411 ---LVQGGGQNSSSQSSGLGGELRDQEFAIILDTLAECQGRRKEMAEKLGISPRTLRYKL 467
               ++ G QN  S++        + E  ++   L   QG ++E A  LG    TL  KL
Sbjct: 410 ADRALRSGHQNLLSEAQ------PELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKL 463

Query: 468 AKM 470
            ++
Sbjct: 464 KEL 466