Pairwise Alignments

Query, 479 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 461 a.a., Regulatory protein AtoC from Escherichia fergusonii Becca

 Score =  312 bits (800), Expect = 1e-89
 Identities = 191/490 (38%), Positives = 282/490 (57%), Gaps = 52/490 (10%)

Query: 4   AQSKVLIVEDDEGLREALIDTLALAGYEWLEADCAEDALLKLKSHSVDIVVSDVQMAGMG 63
           A +++LIV+D++ +R  L    AL G+E   A+    AL        D+V+ D++M  M 
Sbjct: 3   AINRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMD 62

Query: 64  GLALLRSIKQHWPNLPVLLMTAYANIQDAVSAMKDGAIDYMAKPFAPEVLLNMVSRYAPV 123
           G+  L+ ++ H    PV+LMTAYA ++ AV A++ GA DY+ KPF  + L  +V R   +
Sbjct: 63  GIKALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQL 122

Query: 124 KSDDN---------------GDAVVADTKSLKLLALADKVAKTDANVMILGPSGSGKEVM 168
           +S                  G  +      + +     K+A + A+V+I G SG+GKE++
Sbjct: 123 QSMKKEIRHLHQALSTSWQWGHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELI 182

Query: 169 SRYIHNASPRKEGPFIAINCAAIPDNMLEATLFGYEKGAFTGAVQACPGKFEQAQGGTIL 228
           +R IH  S R +GPFI +NCAA+P+++LE+ LFG+EKGAFTGA     G FE+A  GT+L
Sbjct: 183 ARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERANEGTLL 242

Query: 229 LDEISEMDLNLQAKLLRVLQEREVERLGSRKSIKLDVRVLATSNRDLKQYVQAGHFREDL 288
           LDEI EM L LQAKLLR+LQERE ER+G  ++IK+D+R++A +NRDL+  V+ G FREDL
Sbjct: 243 LDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDL 302

Query: 289 YYRLNVFPLTWPALCERKDDIEPLANHLIERHCKKLGLPVPSIAPNAITKLLNYPWPGNV 348
           +YRLNV  L  P L +R++DI  LANH +++   +    +  I P A++ L  + WPGN+
Sbjct: 303 FYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNI 362

Query: 349 RELDNVVQRALILSENGHIQSEHILLEGVDWHDASSLQQAV--AGESMAAPQIKPVAEPE 406
           REL NV++RA++++    I SE +            ++Q V  AGE+  AP         
Sbjct: 363 RELSNVIERAVVMNSGPIIFSEDL---------PPQIRQPVCNAGEAKTAPV-------- 405

Query: 407 VFKPLVQGGGQNSSSQSSGLGGELRDQEFAIILDTLAECQGRRKEMAEKLGISPRTLRYK 466
                   G +N       L  E++  E  II++ L + +G R   A  LGIS R L YK
Sbjct: 406 --------GERN-------LKEEIKRVEKRIIMEVLEQQEGNRTRTALMLGISRRALMYK 450

Query: 467 LAKMRDAGID 476
           L   ++ GID
Sbjct: 451 L---QEYGID 457