Pairwise Alignments

Query, 479 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 445 a.a., two-component system response regulator GlrR from Dickeya dianthicola ME23

 Score =  291 bits (744), Expect = 4e-83
 Identities = 167/398 (41%), Positives = 249/398 (62%), Gaps = 20/398 (5%)

Query: 6   SKVLIVEDDEGLREALIDTLALAGYEWLEADCAEDALLKLKSHSVDIVVSDVQMAGMGGL 65
           + +L+V+DD  L + L   L   G+    A   +DAL  L    +D+V+SD++M  M GL
Sbjct: 7   ASLLLVDDDPSLLKLLGMRLTSEGFTVTTAANGQDALRLLLREKIDLVISDLRMDEMDGL 66

Query: 66  ALLRSIKQHWPNLPVLLMTAYANIQDAVSAMKDGAIDYMAKPFAPEVLLNMVS---RYAP 122
           AL   I+++ P +PV+++TA+ +I +AV+A + G   ++ KP   + L   +    + +P
Sbjct: 67  ALFTEIQKNQPGMPVIILTAHGSIPEAVAATQQGVFSFLTKPVDRDALYKAIDDALKLSP 126

Query: 123 VKSDDNGDAVVADTKS---LKLLALADKVAKTDANVMILGPSGSGKEVMSRYIHNASPRK 179
             SD++  A V  T+S   L+LL  A  VA++D +V+I G SG+GKEV+++ IH ASPR 
Sbjct: 127 PASDESWRAAVV-TRSPIMLRLLEQAKMVAQSDVSVLINGQSGTGKEVLAQAIHAASPRA 185

Query: 180 EGPFIAINCAAIPDNMLEATLFGYEKGAFTGAVQACPGKFEQAQGGTILLDEISEMDLNL 239
             PFIAINC A+P+ +LE+ LFG+ +GAFTGAV    G F+ A+GGT+ LDEI +M L L
Sbjct: 186 GRPFIAINCGALPEPLLESELFGHARGAFTGAVSQREGLFQAAEGGTLFLDEIGDMPLAL 245

Query: 240 QAKLLRVLQEREVERLGSRKSIKLDVRVLATSNRDLKQYVQAGHFREDLYYRLNVFPLTW 299
           Q KLLRVLQER+V  LGS + I ++VR+++ ++RDL + ++ G FREDLYYRLNV  L  
Sbjct: 246 QVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMEKGEFREDLYYRLNVVNLKL 305

Query: 300 PALCERKDDIEPLANHLIERHCKKLGLPVPSIAPNAITKLLNYPWPGNVRELDNVVQRAL 359
           PAL ER +DI  LANHL+     +    V S + +A+ +L+   WPGNVR+L NV+++ +
Sbjct: 306 PALNERAEDIPLLANHLLREAAARHKPFVRSFSTDAMKRLMAASWPGNVRQLVNVIEQCV 365

Query: 360 ILSENGHIQSEHILLEGVDWHDASSLQQAVAGESMAAP 397
            LS    I               + ++QA+ GE+ A P
Sbjct: 366 ALSSAPVIGD-------------ALVEQALEGENTALP 390