Pairwise Alignments

Query, 479 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 461 a.a., fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein from Escherichia coli BL21

 Score =  311 bits (797), Expect = 3e-89
 Identities = 185/489 (37%), Positives = 278/489 (56%), Gaps = 50/489 (10%)

Query: 4   AQSKVLIVEDDEGLREALIDTLALAGYEWLEADCAEDALLKLKSHSVDIVVSDVQMAGMG 63
           A +++LIV+D++ +R  L    AL G+E   A+    AL        D+V+ D++M  M 
Sbjct: 3   AINRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMD 62

Query: 64  GLALLRSIKQHWPNLPVLLMTAYANIQDAVSAMKDGAIDYMAKPFAPEVLLNMVSRYAPV 123
           G+  L+ ++ H    PV+LMTAYA ++ AV A++ GA DY+ KPF  + L  +V R   +
Sbjct: 63  GIKALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQL 122

Query: 124 KSDDN---------------GDAVVADTKSLKLLALADKVAKTDANVMILGPSGSGKEVM 168
           +S                  G  +      + +     K+A + A+V+I G SG+GKE++
Sbjct: 123 QSMKKEIRHLHQALSTSWQWGHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELI 182

Query: 169 SRYIHNASPRKEGPFIAINCAAIPDNMLEATLFGYEKGAFTGAVQACPGKFEQAQGGTIL 228
           +R IH  S R +GPFI +NCAA+P+++LE+ LFG+EKGAFTGA     G FE+A  GT+L
Sbjct: 183 ARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERANEGTLL 242

Query: 229 LDEISEMDLNLQAKLLRVLQEREVERLGSRKSIKLDVRVLATSNRDLKQYVQAGHFREDL 288
           LDEI EM L LQAKLLR+LQERE ER+G  ++IK+D+R++A +NRDL+  V+ G FREDL
Sbjct: 243 LDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDL 302

Query: 289 YYRLNVFPLTWPALCERKDDIEPLANHLIERHCKKLGLPVPSIAPNAITKLLNYPWPGNV 348
           +YRLNV  L  P L +R++DI  LANH +++   +    +  I P A++ L  + WPGN+
Sbjct: 303 FYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNI 362

Query: 349 RELDNVVQRALILSENGHIQSEHILLEGVDWHDASSLQQAVAGESMAAPQIKPVAEPEVF 408
           REL NV++RA++++    I SE +                                P++ 
Sbjct: 363 RELSNVIERAVVMNSGPIIFSEDL-------------------------------PPQIR 391

Query: 409 KPLVQGGGQNSSSQSS-GLGGELRDQEFAIILDTLAECQGRRKEMAEKLGISPRTLRYKL 467
           +P+   G   ++      L  E++  E  II++ L + +G R   A  LGIS R L YKL
Sbjct: 392 QPVCNAGEVKTAPVGERNLKEEIKRVEKRIIMEVLEQQEGNRTRTALMLGISRRALMYKL 451

Query: 468 AKMRDAGID 476
              ++ GID
Sbjct: 452 ---QEYGID 457