Pairwise Alignments

Query, 479 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 473 a.a., Regulatory protein AtoC from Azospirillum sp. SherDot2

 Score =  302 bits (773), Expect = 2e-86
 Identities = 181/475 (38%), Positives = 269/475 (56%), Gaps = 38/475 (8%)

Query: 8   VLIVEDDEGLREALIDTLALAGYEWLEADCAEDALLKLKSHSVDIVVSDVQMAGMGGLAL 67
           VL+V+DDE +RE L   L   G     A    +A+    +    +V+ DV+M  M GL  
Sbjct: 16  VLVVDDDEAIREMLAAVLTRDGLSVTTAADGVEAVAAFAAQRHAVVLMDVRMPRMTGLQA 75

Query: 68  LRSIKQHWPNLPVLLMTAYANIQDAVSAMKDGAIDYMAKPFAPEVLLNMVSR-------- 119
           L  I++   +  V+LMTAYA +  AV A+KDGA DY+ KPF    +L  V R        
Sbjct: 76  LAEIRKLDRSTAVILMTAYAEVGAAVQAIKDGAFDYVIKPFDIAEILLQVGRALQMRRMR 135

Query: 120 ------YAPVKSDDNGDAVV-ADTKSLKLLALADKVAKTDANVMILGPSGSGKEVMSRYI 172
                 +  + S    D ++ A  +  +LL    KVAK++A V++ G SG+GKE+++  I
Sbjct: 136 DDIATLHRELSSSYRTDRILTASPRMSELLQTIAKVAKSNATVLVTGESGTGKELVAAAI 195

Query: 173 HNASPRKEGPFIAINCAAIPDNMLEATLFGYEKGAFTGAVQACPGKFEQAQGGTILLDEI 232
           H  SPR  GPF+ +NCAA+P+ +LE+  FG+E+GAFTGA     G+FEQA+ GT+ LDEI
Sbjct: 196 HYNSPRNAGPFVKVNCAAVPEGLLESEFFGHERGAFTGAQARRRGRFEQAEHGTLFLDEI 255

Query: 233 SEMDLNLQAKLLRVLQEREVERLGSRKSIKLDVRVLATSNRDLKQYVQAGHFREDLYYRL 292
            ++  +LQ KLLRVLQERE ER+G  + ++ DVRV+  +NR+L++ V+ G FR+DLY+RL
Sbjct: 256 GDISPSLQVKLLRVLQEREFERVGGAELVRTDVRVIVATNRNLEEMVRQGLFRQDLYFRL 315

Query: 293 NVFPLTWPALCERKDDIEPLANHLIERHCKKLGLPVPSIAPNAITKLLNYPWPGNVRELD 352
           NV  L    L ER +D+  LA+H ++R   +  + V  I   A+ +LL Y WPGN+REL 
Sbjct: 316 NVVTLRTVPLRERPEDVRLLASHFLQRFAAENRIDVSGIDEQAMERLLAYRWPGNIRELS 375

Query: 353 NVVQRALILSENGHIQSEHILLEGVDWHDASSLQQAVAGESMAAPQIKPVAEPEVFKPLV 412
           N ++RA+++S    I +E              L + +AG    A   +P  + +      
Sbjct: 376 NAMERAVVMSTGAMIVTE-------------DLPEQIAGR---AGDSEPATDTD------ 413

Query: 413 QGGGQNSSSQSSGLGGELRDQEFAIILDTLAECQGRRKEMAEKLGISPRTLRYKL 467
              G  + S +  L  ++   E  ++ D LA   G R + A++LGIS R+L YKL
Sbjct: 414 -SDGAAAPSAAGSLREQVSRFEARVVADALARNDGNRMKTAQQLGISRRSLLYKL 467