Pairwise Alignments

Query, 479 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 513 a.a., sigma 54 dependent transcriptional activator from Agrobacterium fabrum C58

 Score =  290 bits (741), Expect = 1e-82
 Identities = 184/503 (36%), Positives = 283/503 (56%), Gaps = 37/503 (7%)

Query: 8   VLIVEDDEGLREALIDTLALAGYEWLEADCAEDALLKLKSHS--VDIVVSDVQMAGMGGL 65
           VL+++DD   R  L + +   G+  L A+     L  LK +S  ++++V D+ M  M GL
Sbjct: 5   VLVIDDDPVQRRLLKNAVERYGHLALLAENGRAGLELLKQYSGEINVIVLDLMMPEMDGL 64

Query: 66  ALLRSIKQHWPNLPVLLMTAYANIQDAVSAMKDGAIDYMAKPFAPEVL-------LNMVS 118
           A L+++ +   ++PV++ T    I   V AM+ GA D++ KP +PE +       L +  
Sbjct: 65  AFLKAVGELGTDVPVIVQTGQGGIDTVVQAMRAGAFDFVVKPVSPERIGAAISNALKLDR 124

Query: 119 RYAPVKSDDNG--------DAVVADTKSLKLLALADKVAKTDANVMILGPSGSGKEVMSR 170
           + A  ++   G        D V A    L+++ LA + A++   V++ G SG GKE+++R
Sbjct: 125 KEAKARTGRRGRSNAVNFTDIVSASPAMLRVIELAQRAAQSSIPVVLEGESGVGKEMVAR 184

Query: 171 YIHNASPRKEGPFIAINCAAIPDNMLEATLFGYEKGAFTGAVQACPGKFEQAQGGTILLD 230
            I +   R   PFI +NC AIP N++E+ LFG+EKGAFTGA +   GKF +A GGT+ LD
Sbjct: 185 AIQSGGDRANKPFITVNCGAIPHNLVESILFGHEKGAFTGATEKHVGKFMEADGGTLFLD 244

Query: 231 EISEMDLNLQAKLLRVLQEREVERLGSRKSIKLDVRVLATSNRDLKQYVQAGHFREDLYY 290
           EI ++ L++Q KLLR +Q+ E+E +GS +  K++VR+++ +N++L + V+ G FREDLYY
Sbjct: 245 EIGDLPLDVQVKLLRAVQQGEIETVGSARVQKVNVRLISATNKNLIEEVKEGRFREDLYY 304

Query: 291 RLNVFPLTWPALCERKDDIEPLANHLIERHCKKLGLPVP-SIAPNAITKLLNYPWPGNVR 349
           RLNVFP+T PAL  RK+DI  LA    ER   +  LP P  +  +A+  L  Y WPGN+R
Sbjct: 305 RLNVFPITIPALRRRKEDIPHLARVFAERFSAEQKLPNPVGLDASALALLTAYDWPGNIR 364

Query: 350 ELDNVVQRALILSENGHIQSE---HILLE------GVDWHD------ASSLQQAVAGESM 394
           +L+N V RA++LS+   +       I L+      G D  D       SSL+ A      
Sbjct: 365 QLENAVFRAVVLSQGSELSDSDFPQIALQLPEFSNGDDGDDIIRSPSGSSLKLAAYSPPP 424

Query: 395 AAPQIKPVAEP-EVFKPLVQGGGQNSSSQSSGLGGELRDQEFAIILDTLAECQGRRKEMA 453
           AA     + EP ++   + +GG   SS+  SG   +L + E  +I   L   +G+  ++A
Sbjct: 425 AAESHAVIEEPSDISTTIYRGGNLISSTDDSGNIRKLAEIEEELIRFALRFYRGQMSQVA 484

Query: 454 EKLGISPRTLRYKLAKMRDAGID 476
            KLGI   TL     K++D GID
Sbjct: 485 RKLGIGRSTL---YRKLKDYGID 504