Pairwise Alignments

Query, 479 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 483 a.a., two component response regulator from Agrobacterium fabrum C58

 Score =  282 bits (721), Expect = 2e-80
 Identities = 180/482 (37%), Positives = 268/482 (55%), Gaps = 22/482 (4%)

Query: 8   VLIVEDDEGLREALIDTLALAGYEWLEADCAEDALLKLKSHSVDIVVSDVQMAGMGGLAL 67
           +L+ +DD  +R  L   L+ AGY+      A      + +   D+VV+DV M       L
Sbjct: 5   ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWVSAGEGDLVVTDVVMPDENAFDL 64

Query: 68  LRSIKQHWPNLPVLLMTAYANIQDAVSAMKDGAIDYMAKPFAPEVLLNMVSRYA------ 121
           L  IK+  P+LPVL+M+A      A+ A + GA DY+ KPF    L+ ++ R        
Sbjct: 65  LPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIAIIGRALSEPKRK 124

Query: 122 PVKSDDN---GDAVVADTKSLK-LLALADKVAKTDANVMILGPSGSGKEVMSRYIHNASP 177
           P K DD+   G  +V  + +++ +  +  ++ +TD  +MI G SG+GKE+++R +H+   
Sbjct: 125 PAKLDDDMQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALHDYGK 184

Query: 178 RKEGPFIAINCAAIPDNMLEATLFGYEKGAFTGAVQACPGKFEQAQGGTILLDEISEMDL 237
           R+ GPF+AIN AAIP +++E+ LFG+EKGAFTGA     G+FEQA+GGT+ LDEI +M +
Sbjct: 185 RRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQNRSTGRFEQAEGGTLFLDEIGDMPM 244

Query: 238 NLQAKLLRVLQEREVERLGSRKSIKLDVRVLATSNRDLKQYVQAGHFREDLYYRLNVFPL 297
           + Q +LLRVLQ+ E   +G R  I+ DVR++A +N+DLKQ +  G FREDLYYRLNV PL
Sbjct: 245 DAQTRLLRVLQQGEYTTVGGRTPIRTDVRIVAATNKDLKQSINQGLFREDLYYRLNVVPL 304

Query: 298 TWPALCERKDDIEPLANHLIERHCKKLGLPVPSIAPNAITKLLNYPWPGNVRELDNVVQR 357
             P L +R +DI  L  H I+   +K GL        A+  +  Y WPGNVREL+N+++R
Sbjct: 305 RLPPLRDRAEDIPDLVRHFIQTG-EKEGLEGKRFETEALEVMKAYAWPGNVRELENLIRR 363

Query: 358 ALILSENGHIQSEHILLE-GVDWHDASSLQQAVAGESMAAPQIKPVAEPEVFKPLVQGGG 416
            + L     I  E I  E   D  D+   + AV   S+   Q       + F     G  
Sbjct: 364 LMALYPQEVITREIIEQELQSDVPDSPLDKMAVRTGSLTISQAVEENMRDYFASFGDG-- 421

Query: 417 QNSSSQSSGLGGE-LRDQEFAIILDTLAECQGRRKEMAEKLGISPRTLRYKLAKMRDAGI 475
                   GL    LR+ E+ +IL  L   +G + + A+ LG++  TLR    K+R+ G+
Sbjct: 422 ----LPPPGLYDRVLRELEYPLILAALTATRGNQIKAADLLGLNRNTLR---KKIRELGV 474

Query: 476 DI 477
            +
Sbjct: 475 SV 476