Pairwise Alignments

Query, 479 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 448 a.a., two component response regulator from Agrobacterium fabrum C58

 Score =  278 bits (712), Expect = 2e-79
 Identities = 171/450 (38%), Positives = 258/450 (57%), Gaps = 49/450 (10%)

Query: 3   MAQSKVLIVEDDEGLREALIDTLALAGYEWLEADCAEDALLKLKSHSVD-IVVSDVQMAG 61
           M  S+VL+++D+E LR +    L L+G+       AE AL +L  +S D +VVSD++M G
Sbjct: 1   MTMSRVLLIDDEEELRFSTAQALELSGFAVTMLASAEHAL-ELIGYSFDGVVVSDIRMPG 59

Query: 62  MGGLALLRSIKQHWPNLPVLLMTAYANIQDAVSAMKDGAIDYMAKPFAPEVLLNMVSRYA 121
           M G+ LL+ +++  P +PV+LMT + ++Q AV+AM++GA D++ KPF P+ L  ++ R  
Sbjct: 60  MDGMTLLQKVRELDPEIPVILMTGHGDVQLAVNAMRNGAYDFIEKPFTPQYLAGIIKRA- 118

Query: 122 PVKSDDNGDAVVADTKSLKLLA----------------LAD------KVAKTDANVMILG 159
                ++  A+V + + LK +A                + D       +  TDA+ +I+G
Sbjct: 119 -----NDRRALVLENRRLKAVAGKHDDLETRLPGRTQVMVDLRYRIRAIGATDADTLIVG 173

Query: 160 PSGSGKEVMSRYIHNASPRKEGPFIAINCAAIPDNMLEATLFGYEKGAFTGAVQACPGKF 219
            +G+GKEV++R +H+ S R   PF+AINCAA+P  ++E+ LFG+E GAF GA+++  GKF
Sbjct: 174 DTGAGKEVVARALHDISARANRPFVAINCAALPQTLIESELFGHEAGAFPGALRSRYGKF 233

Query: 220 EQAQGGTILLDEISEMDLNLQAKLLRVLQEREVERLGSRKSIKLDVRVLATSNRDLKQYV 279
           E A+GGTILLDEI  M   LQ + LRVLQER + RLGS ++++LDVR +ATS  DL+Q V
Sbjct: 234 EHARGGTILLDEIGSMPFELQGRFLRVLQERVITRLGSNETVELDVRFIATSKVDLEQEV 293

Query: 280 QAGHFREDLYYRLNVFPLTWPALCERKDDIEPLANHLIERHCKKLGLPVPSIAPNAITKL 339
            AG FR DL YRLNV  L  P+L +R  DI  L  HL+     + G     +  + ++ +
Sbjct: 294 AAGRFRADLLYRLNVATLLVPSLSQRSADIPLLFLHLVREAAARYGREDMDVPQHLLSAV 353

Query: 340 LNYPWPGNVRELDNVVQRALILSENGHIQSEHILLEGVDWHDASSLQQAV--AGESMAAP 397
               WPGNVREL N   R ++  E+                D S +  A+   G S  AP
Sbjct: 354 SLREWPGNVRELRNAADRFVLGLES----------------DVSEVSLALDDDGTSTLAP 397

Query: 398 QIKPVAEPEVFKPL-VQGGGQNSSSQSSGL 426
           ++    +  +   + V GG   S  +S G+
Sbjct: 398 RVAAYEKSLIAHAIAVHGGNLKSVYESLGI 427