Pairwise Alignments

Query, 580 a.a., flagellar basal body M-ring protein FliF from Vibrio cholerae E7946 ATCC 55056

Subject, 555 a.a., Flagellar M-ring protein from Xanthobacter sp. DMC5

 Score =  157 bits (397), Expect = 1e-42
 Identities = 138/545 (25%), Positives = 242/545 (44%), Gaps = 27/545 (4%)

Query: 49  DLDLLRQVVLVLSISICVALIVMLFFWVREPDMRPLGAYETEELIPVLDYLDQQKQ---Q 105
           DL   R + L L     VA + +  +++ +P+  PL A  T E +  +    +       
Sbjct: 16  DLGARRLIALALIGLTAVAAVALGAWYLGQPEREPLYANLTREDVNRIGGALKDAGIPFD 75

Query: 106 YKLDGNTILVPVSDYNSLKLSMVRAGLNQNRQAGDEILMQDMGFGVSQRLEQERLKLSRE 165
              DG T+LV  SD    ++ +   GL Q+   G E+      FG++  +++     + E
Sbjct: 76  VNADGTTVLVSHSDTARARMLLAVKGLPQSGNTGYELFNDVRAFGLTSFMQEVTRVRALE 135

Query: 166 RQLAKAIEEMRQVNKARVLLALPKQSVFVRHNQEASASVFLTVRTGANLKQEEIDAVVDM 225
            +LA+ I+ M+ +  ARV + LP++  F R  Q ASASV +   T  +    +  A+  +
Sbjct: 136 GELARTIQTMKGIKAARVHIVLPERGSFRRDQQSASASVVIRTETAEDASTAQ--AIRHL 193

Query: 226 VASAVPGMKPSRVTVTDQHGRLLSSGSQDPVSAARRKEQELEKQQEEALRGKIDSVLIPI 285
           VA+A+PG+K  +VTV    G +LSS S+D  SAA  K+  L++Q       K+   L P 
Sbjct: 194 VAAAIPGLKMDQVTVLSTEGAVLSS-SEDGASAAAGKKAMLQQQVSRETEEKVRRTLAPY 252

Query: 286 LGLGNYTAQVDIELDFSAVEQTRKVFDPNTPATRSEYTLEDYNNGNVVAGVPGALSNQPP 345
           +GLGN+  QV   LD   V  +   FDP +   RS   +++          P     Q  
Sbjct: 253 IGLGNFEVQVSARLDTDRVTTSETTFDPASKVERSVRVVKELGQSQNKTKQPNTSVQQ-- 310

Query: 346 ADASIPQDVAQMKDGSVMGQGSVHKEATRNYELDTTISHERKQSGVINRQTVAVAVKSRS 405
              +IP    Q   G+   + S  +E   N+E+ T      +++ V+   ++AV V ++ 
Sbjct: 311 ---NIPGQTQQGDGGTDSNENSSRREELTNFEVSTRTVQTVREAFVVRGLSIAVLV-NKE 366

Query: 406 SVNPDTGEVTYTPLSEADLNSIRQVLIGTVGYSENRGDLLNVLSMPFAE--PEMEQIVDV 463
            +    G     P+ E  L  + Q++    G+ + RGD L V ++ FA     +E +  +
Sbjct: 367 RLMGAAGGADAIPV-EQQLYEVEQLVASAAGFDKERGDKLKVAAVSFANGGAALEPVPPL 425

Query: 464 PIWEHPNFNDWVRWFASALVIIIVILVL---VRPAMKKLI-NPAADNDDQMYGPD----- 514
           P W             +A ++I+  LV+   ++PA++ ++  P  D  +     +     
Sbjct: 426 P-WSELLLRQAGTMINAATILIVAGLVIWFGLKPAVRAILARPERDEVEDAEAIEAAMLA 484

Query: 515 -GMPIGADGETSLI-GSDIDGGELFEFGSGIDLPNLHKDEDVLKAVRALVANEPELAAQV 572
            G P+ A    S++ G    G E     S I+      +    K +  +V  + E  A +
Sbjct: 485 GGAPLAAVAGPSMVPGEGAAGEEAPGALSLIEDLTSRLNRSPQKRLEQIVEFDEEQVAAI 544

Query: 573 VKNWM 577
           ++ W+
Sbjct: 545 LRQWL 549