Pairwise Alignments

Query, 580 a.a., flagellar basal body M-ring protein FliF from Vibrio cholerae E7946 ATCC 55056

Subject, 552 a.a., flagellar M-ring protein (NCBI) from Escherichia coli BW25113

 Score =  211 bits (536), Expect = 8e-59
 Identities = 165/551 (29%), Positives = 269/551 (48%), Gaps = 49/551 (8%)

Query: 55  QVVLVLSISICVALIVMLFFWVREPDMRPLGA-YETEELIPVLDYLDQQKQQYKLD--GN 111
           ++ L+++ S  VA++V L  W + PD R L +    ++   ++  L Q    Y+      
Sbjct: 22  KIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASG 81

Query: 112 TILVPVSDYNSLKLSMVRAGLNQNRQAGDEILMQDMGFGVSQRLEQERLKLSRERQLAKA 171
            I VP    + L+L + + GL +    G E+L Q+  FG+SQ  EQ   + + E +L++ 
Sbjct: 82  AIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQEK-FGISQFSEQVNYQRALEGELSRT 140

Query: 172 IEEMRQVNKARVLLALPKQSVFVRHNQEASASVFLTVRTGANLKQEEIDAVVDMVASAVP 231
           IE +  V  ARV LA+PK S+FVR  +  SASV + +  G  L + +I A+V +V+SAV 
Sbjct: 141 IETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVA 200

Query: 232 GMKPSRVTVTDQHGRLLSSGSQDPVSAARRKEQELE--KQQEEALRGKIDSVLIPILGLG 289
           G+ P  VT+ DQ G LL   +Q   S     + +L+     E  ++ +I+++L PI+G G
Sbjct: 201 GLPPGNVTLVDQGGHLL---TQSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNG 257

Query: 290 NYTAQVDIELDFSAVEQTRKVFDPN----TPATRSEYTLEDYNNGN-VVAGVPGALSNQ- 343
           N  AQV  +LDF++ EQT + + PN      A RS    E   +G+    GVPGALSNQ 
Sbjct: 258 NIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQP 317

Query: 344 ----------PPADASIPQDVAQMKDGSVMGQGSVHKEATRNYELDTTISHERKQSGVIN 393
                     PPA+ +  Q  A     S  G  S  +  T NYE+D TI H +   G + 
Sbjct: 318 APANNAPISTPPANQNNRQQQASTTSNS--GPRSTQRNETSNYEVDRTIRHTKMNVGDVQ 375

Query: 394 RQTVAVAVKSRSSVNPDTGEVTYTPLSEADLNSIRQVLIGTVGYSENRGDLLNVLSMPFA 453
           R +VAV V  ++   PD   +   PLS   +  I  +    +G+SE RGD LNV++ PF 
Sbjct: 376 RLSVAVVVNYKTL--PDGKPL---PLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPFN 430

Query: 454 EPEMEQIVDVPIWEHPNFNDWVRWFASALVIIIVILVLVRPAMKKLINPAADNDDQMYGP 513
             + E   ++P W+   F D +      L++++V  +L R A++  +   A+        
Sbjct: 431 SSD-ESGGELPFWQQQAFIDQLLAAGRWLLVLLVAWLLWRKAVRPQLTRRAE-------- 481

Query: 514 DGMPIGADGETSLIGSDIDGGELFEFGSGIDLPNLHKD-----EDVLKAVRALVANEPEL 568
               + A  + +    +++            L     +     E + + +R +  N+P +
Sbjct: 482 ---AMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQRLGAEVMSQRIREMSDNDPRV 538

Query: 569 AAQVVKNWMQN 579
            A V++ W+ N
Sbjct: 539 VALVIRQWINN 549