Pairwise Alignments

Query, 348 a.a., flagellar motor switch protein FliG from Vibrio cholerae E7946 ATCC 55056

Subject, 339 a.a., flagellar motor switch protein FliG from Pseudomonas simiae WCS417

 Score =  374 bits (960), Expect = e-108
 Identities = 184/332 (55%), Positives = 259/332 (78%), Gaps = 1/332 (0%)

Query: 18  ISEIPGEEKAAILLLSLNEEDAAGIIRHLEPKQVQRVGSAMARAKDLSQTKVSAVHRAFL 77
           ++++   +KAA+LLLSL E DAA ++RH+ PK+VQRVG AMA+ +++ + +V  V   F+
Sbjct: 8   VAKLTKVDKAAVLLLSLGETDAAQVLRHMGPKEVQRVGVAMAQMRNVHREQVEQVMSEFV 67

Query: 78  EDIQKYTNIGMGSEDFLRNALVAALGADKANNLVDQILLGTGSKGLDSLKWMDPRQVASI 137
           E +   T++G+GS+ ++R  L +ALG DKAN L+D+ILLG  + GLDSLKWM+PR VA +
Sbjct: 68  EIVGDQTSLGVGSDSYIRKMLTSALGEDKANGLIDRILLGGNTSGLDSLKWMEPRAVADV 127

Query: 138 IINEHPQIQTIVLSYLEPDQSAEILAQFAQRDALDLLMRIANLEEVQPSALAELNEIMEK 197
           I  EHPQIQ IV++YL+PDQ+ E+L  F  +  LD+++R+++L  VQP+AL ELN I+EK
Sbjct: 128 IRYEHPQIQAIVVAYLDPDQAGEVLGHFDHKVRLDIILRVSSLNTVQPAALKELNTILEK 187

Query: 198 QFAGQAGAQAAKIGGLKAAADIMNYLDNNIESVLMEGMREKDEDLATQIQDLMFVFENLV 257
           QF+G + A    +GG+K AADIMN+LD+++E  LM+ +RE D+ L+ QI+DLMFVF NL 
Sbjct: 188 QFSGNSNASRTTLGGIKRAADIMNFLDSSVEGQLMDSIREIDDTLSGQIEDLMFVFNNLS 247

Query: 258 EVDDQGIQKLLRDVPQDVLQKALKGADDTLREKIFKNMSKRAAEMMKDDLEAMPPIKVSD 317
           +VDD+GIQ LLR+V  DVL  ALKG+D+ ++EKIFKNMSKRA+E+++DDLEA  P++VSD
Sbjct: 248 DVDDRGIQALLREVSSDVLVLALKGSDENVKEKIFKNMSKRASELLRDDLEAKGPVRVSD 307

Query: 318 VEAAQKEILSIARRMADNGEIMLGG-GADEFL 348
           VE AQKEIL+IARRMA+ GEI+LGG G +E +
Sbjct: 308 VETAQKEILTIARRMAEAGEIVLGGKGGEEMI 339