Pairwise Alignments

Query, 439 a.a., flagellum-specific ATP synthase FliI from Vibrio cholerae E7946 ATCC 55056

Subject, 431 a.a., Type III secretion cytoplasmic ATP synthase (EC 3.6.3.14, YscN,SpaL,MxiB,HrcN,EscN) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  278 bits (710), Expect = 3e-79
 Identities = 159/406 (39%), Positives = 238/406 (58%), Gaps = 8/406 (1%)

Query: 28  RVVGLTLEATGCKAPVGSLCKVETMNGEME----AEVVGFSGDNLFLMPSEQIIGVLPGA 83
           ++ G  +EA      +G LC++     + +    A+VVG   +   L       G+    
Sbjct: 15  KITGPIIEAELRDVAIGELCEIRRGWHQKQVVARAQVVGLQRERTVLSLIGNAQGLSRDV 74

Query: 84  KVTPITTESGLPVGMELLGRVIDGVGNPLDGLGPIYT--DQRASLNAIPINPLARKPINE 141
            + P        VG  +LG V+D  G  ++   P      +   ++  P +  +R  + E
Sbjct: 75  VLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYASRVGVRE 134

Query: 142 PLDVGIKAINGLLTVGKGQRIGLFAGSGVGKSVTLGMMTRGTTAQVVVVGLIGERGREVK 201
           PL  G++AI+GLLT G GQR+G+FA +G GK++ + M+   T A V V+GLIGERGREV 
Sbjct: 135 PLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEADVFVIGLIGERGREVT 194

Query: 202 EFIEEILGVDGRQRSVVVAAPADSSPLMRLKGCQTALTIAEYFRDQGLDVLLLMDSLTRF 261
           EF++ +     +++ V+V A +D   + R    Q A T+AEYFRDQG  V+L +DS+TR+
Sbjct: 195 EFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRY 254

Query: 262 AQAQREIALSVGEPPATKGYPPSVFAKLPALVERAGNGGPHQGSITAFFTVLTEGDDLQD 321
           A+A R++AL+ GE PA +GYP SVF  LP L+ER   G   +GSITAF+TVL E ++  D
Sbjct: 255 ARALRDVALASGERPARRGYPASVFDNLPRLLERP--GATSEGSITAFYTVLLESEEEAD 312

Query: 322 PIADASRAILDGHIVLSREMADAGHYPAIDVEKSVSRVMPQITTDEHLLMSKAVRQILSV 381
           P+AD  R+ILDGH+ LSR++A  GHYPAIDV KSVSRV  Q+TT  H   + AVR++++ 
Sbjct: 313 PMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTR 372

Query: 382 CRKNQDLVSIGAYKPGTDKAIDAAFTLKPKLDQYLQQAMKETVPYD 427
             + Q  + +G Y+PG +   D A  ++  L  +L Q + +   +D
Sbjct: 373 LEELQLFIDLGEYRPGENIDNDRAMQMRDSLKAWLCQPVAQYSSFD 418