Pairwise Alignments

Query, 674 a.a., flagellar hook-length control protein FliK from Vibrio cholerae E7946 ATCC 55056

Subject, 771 a.a., flagellar hook-length control protein from Alteromonas macleodii MIT1002

 Score =  112 bits (281), Expect = 5e-29
 Identities = 118/463 (25%), Positives = 209/463 (45%), Gaps = 55/463 (11%)

Query: 239 SNRALSTSADLDAAVSDSAATEDE------IAQDEWMASALMGGALVGGLSGASLAAANT 292
           S++ +    +L A ++    TE        +A D   A+AL G  ++  L+G S +   +
Sbjct: 337 SDKKVKNDNELSALIAKLMQTEHTENPEQGLASDTEAANALSG--MLETLNGLSESGKKS 394

Query: 293 VHAEPVEGAMLEGMPLTQTFANTAALASPSAEVSEALAASSQALKATPLTQSALNPASIM 352
                V   + + +   Q  +    LA     ++E L + +  + +  +  +A + A  +
Sbjct: 395 ADESLVLSLLADELNNIQAKSLDDNLAEAQELLAE-LTSEAAVVGSVAVNTAASSDAKSV 453

Query: 353 ADEGLNQSTSATETGKVVIPWG-TQMPTD--NELAALTPEL--KAMLEEGGKAKAPVPNA 407
           + EGL+   ++ E  KVV  +G T++ +D  + ++ L+P+   KA      +  A +P  
Sbjct: 454 SSEGLSNVDNSGEQTKVVDSFGATEISSDLLSAISELSPQSAQKATEAFAERVVAALPGG 513

Query: 408 LAQ-----SVAQGLTPAHLAAQQTGTTALPMNPTAATPIDIAALAPQTVAVNPMLNPAAT 462
             Q     ++  G+       QQ     + ++   A     AA++   VA          
Sbjct: 514 AQQQAVKANIIAGINEFQQQVQQGREPGIDLSTIVADAAKDAAVSADVVA---------- 563

Query: 463 VNPELAASSAMLAALGGRALAGSDERRAVSESGQEDLAQQIAAAAGQGTAQNQALNRAES 522
                    +M A + G+A    +       S Q  +A  +     +   Q  +  RAE+
Sbjct: 564 ---------SMTARVDGQASQFLNLMTQTQASAQHAIAGLVNPT--ESVMQENSQLRAEA 612

Query: 523 QLVQTNAT----PVPLNKEMAADQLAERVQMMMSKNLKNIDIRLDPPELGRMHIRMNMQG 578
              Q         V ++K     QL+E+++ M++      +IRLDPPELG M +R+N+ G
Sbjct: 613 SKTQQQFEGFDKAVNIHKSDGQQQLSEKIRWMVNARNTMAEIRLDPPELGSMQVRVNVAG 672

Query: 579 DGATVHFTVANQHAREALEQTMPRLREMLAQQGVQLGDTSVQQ-QSAGQQ--QRYTGQEQ 635
           D A+V F V +Q A++AL   MP+LR+ML++QG++LGD  V++  S+GQ+  Q+  G   
Sbjct: 673 DAASVSFVVQSQQAKDALADAMPKLRDMLSEQGIELGDAQVRKDNSSGQENGQQLAGNSH 732

Query: 636 SGFGQSARNERLNSEENLDTD----IKLDLNVATKRDGISYYA 674
            G G   R E    +   DTD    I+  ++ A K  GI +YA
Sbjct: 733 QGQGAGDRGENDGVD---DTDGMRVIEQSISRADK-GGIDFYA 771