Pairwise Alignments

Query, 349 a.a., flagellar motor switch protein FliM from Vibrio cholerae E7946 ATCC 55056

Subject, 311 a.a., hypothetical protein from Xanthobacter sp. DMC5

 Score = 86.3 bits (212), Expect = 1e-21
 Identities = 62/275 (22%), Positives = 120/275 (43%), Gaps = 2/275 (0%)

Query: 49  RMPTLELINERFARHLRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRP 108
           R+P L ++ +R A      L  +    A  S++ V+  + G+            +     
Sbjct: 26  RLPMLHVLFDRMATFCADGLRQVAASQAYYSLSSVESGRIGDVLEAYEGMAIAGIFNAPS 85

Query: 109 LKGTALVTMEARLVFILVENFFGGDGRYHARIEGREFTPTERRVIQLLLKIVFADYKEAW 168
                +V  +   +F ++E  FG DG      + R F+  E RV QLL + +    K A+
Sbjct: 86  WDSQLIVGFDRDFIFTMIEVLFGADGSEPPVEDERSFSNIEGRVAQLLFEQMTKALKSAF 145

Query: 169 SPVMGVEFEYLDSEVNPSMANIVSPTEVIVVSSFHVEVDGGGGDFHMVMPYSMVEPIREL 228
           + V    F++   E     A I     + V + F ++    GG+  + +P S + P+R  
Sbjct: 146 ALVSDTTFQFERQETRMDFAVIGRRNNLAVTAKFLLQALNRGGEMFVTIPQSALTPLRRA 205

Query: 229 LDAGVQSDKMETDVRWSTALREEIMDVPVNFRVNLLEMDIALRDLMELQVGDVIPIKMPE 288
           L +  Q++    D +W+  +R+E+    V  R  L E ++ L D+  L+VG ++ +    
Sbjct: 206 LASTSQAETGGRDPKWAQKIRDEVNRTEVELRAVLDEHEVTLGDIAALKVGQILKLDATP 265

Query: 289 HAVMFVEEL--PTYRVKMGRSGEKLAVQVSEKIKR 321
            + + +E    P +   +G+S     V++ E+I +
Sbjct: 266 ASRVKLESAAQPLFWCHLGQSDGGYVVRLDEQINQ 300