Pairwise Alignments

Query, 349 a.a., flagellar motor switch protein FliM from Vibrio cholerae E7946 ATCC 55056

Subject, 334 a.a., Flagellar motor switch protein FliM from Variovorax sp. SCN45

 Score =  276 bits (705), Expect = 7e-79
 Identities = 138/322 (42%), Positives = 209/322 (64%), Gaps = 3/322 (0%)

Query: 4   LLSQDEIDALLHGVDSVDEEEEELPKSGPS--ATNFDFSSQDRIVRGRMPTLELINERFA 61
           +LSQDE+DALL GV   D ++   P   P      +D  + DR+VR RM TLE+IN+RFA
Sbjct: 6   VLSQDEVDALLQGVTGGDIDQSSPPPPPPKDGLPAYDLGAPDRVVRNRMHTLEVINDRFA 65

Query: 62  RHLRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALVTMEARL 121
           R LR +L N +R++ ++S+  VQ+ +FGE+   L VP ++NM+  +PL+GTAL   + +L
Sbjct: 66  RGLRGALLNFMRRSPDISVGQVQIQQFGEFVRHLPVPANINMIHMKPLRGTALFVFDPKL 125

Query: 122 VFILVENFFGGDGRYHARIEGREFTPTERRVIQLLLKIVFADYKEAWSPVMGVEFEYLDS 181
           VF++V+N FG DGRYH R+EGR+FT TE+R+I+ LL I    Y EAW PV  ++F+Y+ +
Sbjct: 126 VFLVVDNLFGSDGRYHVRVEGRDFTRTEQRIIKRLLDISLQCYGEAWQPVFPLDFDYVRA 185

Query: 182 EVNPSMANIVSPTEVIVVSSFHVEVDGGGGDFHMVMPYSMVEPIRELLDAGVQSDKMETD 241
           E++  +ANIV+P EV++ ++  +E    GG  H+ +PYSM+EPIR+LL   +Q D++E D
Sbjct: 186 EMHGKLANIVAPNEVVINTTLQIEFGPIGGFLHVCLPYSMIEPIRDLLSNPIQ-DEVEVD 244

Query: 242 VRWSTALREEIMDVPVNFRVNLLEMDIALRDLMELQVGDVIPIKMPEHAVMFVEELPTYR 301
            RW T +  ++    V    + + M   L ++M+L+VGDVIPI++PE  V  V  +P   
Sbjct: 245 KRWVTQMSRQMQAADVELVADFVTMPSTLGEVMKLRVGDVIPIELPETVVAKVGGVPVME 304

Query: 302 VKMGRSGEKLAVQVSEKIKRPD 323
              G S E+ A++V + I   D
Sbjct: 305 CGYGTSNERYALRVQQMISHQD 326