Pairwise Alignments

Query, 349 a.a., flagellar motor switch protein FliM from Vibrio cholerae E7946 ATCC 55056

Subject, 322 a.a., flagellar synthesis, switching and energizing component from Pseudomonas putida KT2440

 Score =  386 bits (992), Expect = e-112
 Identities = 184/319 (57%), Positives = 250/319 (78%), Gaps = 2/319 (0%)

Query: 3   DLLSQDEIDALLHGVDSVDEEEEELPKSGPSATNFDFSSQDRIVRGRMPTLELINERFAR 62
           DLLSQDEIDALLHGVD    + E   + G S  ++D +SQDRIVRGRMPTLE+INERFAR
Sbjct: 5   DLLSQDEIDALLHGVDDGLVQTESASEPG-SIKSYDLTSQDRIVRGRMPTLEMINERFAR 63

Query: 63  HLRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALVTMEARLV 122
           + RIS+FN+LR++A+V++ GVQ+MKFGEY ++LYVPTSLN+V+ +PL+GT+L  ++A+LV
Sbjct: 64  YTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKIKPLRGTSLFILDAKLV 123

Query: 123 FILVENFFGGDGRYHARIEGREFTPTERRVIQLLLKIVFADYKEAWSPVMGVEFEYLDSE 182
           F LV+NFFGGDGR HA+IEGREFTPTE RV++++L   F D KEAW  +M V FEY++SE
Sbjct: 124 FKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQCFVDLKEAWQAIMPVSFEYMNSE 182

Query: 183 VNPSMANIVSPTEVIVVSSFHVEVDGGGGDFHMVMPYSMVEPIRELLDAGVQSDKMETDV 242
           VNP+MANIV P+E +VVS+FH+E+DGGGGD H+ MPYSM+EP+RE+LDAG QSD  + D 
Sbjct: 183 VNPAMANIVGPSEAVVVSTFHIELDGGGGDLHVTMPYSMIEPVREMLDAGFQSDLDDQDE 242

Query: 243 RWSTALREEIMDVPVNFRVNLLEMDIALRDLMELQVGDVIPIKMPEHAVMFVEELPTYRV 302
           RW  ALRE+++DV V     +    + LRD++ +Q GDVIP+++PEH V+    +P ++ 
Sbjct: 243 RWVKALREDVLDVAVPMTATVARRQLKLRDILHMQPGDVIPVELPEHLVLRANGVPAFKA 302

Query: 303 KMGRSGEKLAVQVSEKIKR 321
           ++G     LA+Q+ + I+R
Sbjct: 303 RLGSHKGNLALQIIDPIER 321