Pairwise Alignments

Query, 349 a.a., flagellar motor switch protein FliM from Vibrio cholerae E7946 ATCC 55056

Subject, 334 a.a., flagellar motor switch protein M (NCBI) from Escherichia coli BW25113

 Score =  239 bits (609), Expect = 1e-67
 Identities = 117/317 (36%), Positives = 189/317 (59%), Gaps = 1/317 (0%)

Query: 4   LLSQDEIDALLHGVDSVDEEEEELPKSGPSATNFDFSSQDRIVRGRMPTLELINERFARH 63
           +LSQ EIDALL+G   V +E             +D ++Q R+VR R+  LE+INERFARH
Sbjct: 5   ILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFARH 64

Query: 64  LRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALVTMEARLVF 123
            R+ LFN+LR++ ++++  +++  + E+   L VPT+LN++  +PL+GT LV     LVF
Sbjct: 65  FRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVF 124

Query: 124 ILVENFFGGDGRYHARIEGREFTPTERRVIQLLLKIVFADYKEAWSPVMGVEFEYLDSEV 183
           I V+N FGGDGR+  ++EGREFT TE+RVI  +LK+    Y +AW  +  +E EY+ SE+
Sbjct: 125 IAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEM 184

Query: 184 NPSMANI-VSPTEVIVVSSFHVEVDGGGGDFHMVMPYSMVEPIRELLDAGVQSDKMETDV 242
                NI  SP +++V + FHVE+    G+F++ +P+SM+EP+RELL      +    D 
Sbjct: 185 QVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQ 244

Query: 243 RWSTALREEIMDVPVNFRVNLLEMDIALRDLMELQVGDVIPIKMPEHAVMFVEELPTYRV 302
            W   L  ++    +    N  ++ + L  +++L  GDV+PI+ P+  +  V+ +P    
Sbjct: 245 NWRDNLVRQVQHSQLELVANFADISLRLSQILKLNPGDVLPIEKPDRIIAHVDGVPVLTS 304

Query: 303 KMGRSGEKLAVQVSEKI 319
           + G    + A+++   I
Sbjct: 305 QYGTLNGQYALRIEHLI 321