Pairwise Alignments

Query, 299 a.a., flagellar biosynthetic protein FliP from Vibrio cholerae E7946 ATCC 55056

Subject, 217 a.a., type III secretion system protein SsaR from Pseudomonas simiae WCS417

 Score =  150 bits (378), Expect = 3e-41
 Identities = 84/207 (40%), Positives = 133/207 (64%), Gaps = 8/207 (3%)

Query: 99  ILALMT-MLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIALFLTFFIMA 157
           ILAL    L  +P ++I+ TSF +IV+V+ I R A+G+QQ P +  + GIAL  T FIMA
Sbjct: 10  ILALFVGALALMPMLLIICTSFLKIVIVLMITRNAIGVQQVPPSMAVNGIALAATLFIMA 69

Query: 158 PVFNQINE--QAVQPYLNEQITARQAFDLAQEPLKAFMLKQTRVNDLETFVEMSGAQVTA 215
           PV  +I E  +A     +  I   Q    A +PL+AFML+    + L   +E +     A
Sbjct: 70  PVGYEIAEGIKASPVDTSSVINFLQTGREAIQPLRAFMLRNVDPDVLTHLLENTARLWPA 129

Query: 216 P-----EQVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGMMMLSPMI 270
                 ++  + +L+PAF+ S+L+  F+IGF++++PF++IDL+V+++L+A+GM M+SPM 
Sbjct: 130 KMAQEVQREDLILLVPAFVLSQLQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMT 189

Query: 271 VSLPFKLMLFVLVDGWNLILSTLAGSF 297
           +SLP KL+LFV+V GW+ +L +L  S+
Sbjct: 190 ISLPLKLLLFVMVSGWSRLLDSLFLSY 216