Pairwise Alignments

Query, 299 a.a., flagellar biosynthetic protein FliP from Vibrio cholerae E7946 ATCC 55056

Subject, 224 a.a., Type III secretion inner membrane protein (YscR,SpaR,HrcR,EscR,homologous to flagellar export components) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  132 bits (333), Expect = 5e-36
 Identities = 75/212 (35%), Positives = 122/212 (57%), Gaps = 22/212 (10%)

Query: 96  NLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIALFLTFFI 155
           ++ ++AL+     LP ++   T F +  +V  ++R A+GLQQ PSN  + G+AL L+ F+
Sbjct: 4   DISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLSMFV 63

Query: 156 MAPVFNQINEQAVQPYLNEQITARQAFDLAQ---EPLKAFMLKQTRVNDLETFVEMSGAQ 212
           M P+ +     A   + +E +T      L++   E L  +     + +D E       AQ
Sbjct: 64  MWPIMHD----AYVYFEDEDVTFNDISSLSKHVDEGLDGYRDYLIKYSDRELVQFFENAQ 119

Query: 213 VTAP---------------EQVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASV 257
           +                  E+ S+  L+PA+  SE+K+AF+IGF L+LPF+++DLVV+SV
Sbjct: 120 LKRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYLYLPFVVVDLVVSSV 179

Query: 258 LMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLI 289
           L+A+GMMM+SP+ +S P KL+LFV +DGW L+
Sbjct: 180 LLALGMMMMSPVTISTPIKLVLFVALDGWTLL 211