Pairwise Alignments

Query, 299 a.a., flagellar biosynthetic protein FliP from Vibrio cholerae E7946 ATCC 55056

Subject, 215 a.a., Type III secretion inner membrane protein (YscR,SpaR,HrcR,EscR,homologous to flagellar export components) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  154 bits (390), Expect = 1e-42
 Identities = 83/215 (38%), Positives = 133/215 (61%), Gaps = 20/215 (9%)

Query: 97  LQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIALFLTFFIM 156
           LQ++ ++ +L  LP ++++ TSF ++ VV SILR A+G+QQ P N  + G+AL L+ FIM
Sbjct: 8   LQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIM 67

Query: 157 APVFNQINEQ------AVQPYLNEQITARQAFDLAQEPLKAFMLKQTRVNDLETFVEMSG 210
            P    + E+      A  P+   +  ++     A  P + F+ K +   +   F  +  
Sbjct: 68  GPTLLAVKERWHPVQVAGAPFWTSEWDSK-----ALAPYRQFLQKNSEEKEANYFRNL-- 120

Query: 211 AQVTAPEQV-------SMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGM 263
            + T PE +       S+ +LIPAF  S+L  AF+IG +++LPFL IDL+++++L+AMGM
Sbjct: 121 IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM 180

Query: 264 MMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSFA 298
           MM+SPM +SLPFKL++F+L  GW+L L+ L  SF+
Sbjct: 181 MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS 215