Pairwise Alignments

Query, 299 a.a., flagellar biosynthetic protein FliP from Vibrio cholerae E7946 ATCC 55056

Subject, 217 a.a., type III secretion system export apparatus subunit SctR from Erwinia tracheiphila SCR3

 Score =  144 bits (362), Expect = 2e-39
 Identities = 79/201 (39%), Positives = 125/201 (62%), Gaps = 11/201 (5%)

Query: 106 LGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIALFLTFFIMAPVFNQINE 165
           L  +P ++I+ T F +I +V+ I R A+G+QQ P N  + GIAL  T F+MAPVFNQ+  
Sbjct: 18  LSLIPMLMIVCTCFLKISMVLLITRNAIGVQQVPPNMALYGIALAATLFVMAPVFNQMQH 77

Query: 166 QAVQPY--LNEQITARQAFDLAQEPLKAFMLKQTRVNDLETFVEMSGAQVTAPEQVS--- 220
           Q  Q    L+     + +      PL+ FM   T  + L    E S      P+++S   
Sbjct: 78  QFSQAPADLSSMDNLKTSMTNGVAPLQKFMTHNTDPDILIHLQENSMRMW--PKEMSDNV 135

Query: 221 ----MAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGMMMLSPMIVSLPFK 276
               + ++IPAF+ SEL+  F+IGF++++PF++IDL+V++VL+A+GM M++PM +SLP K
Sbjct: 136 SKDNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSLPLK 195

Query: 277 LMLFVLVDGWNLILSTLAGSF 297
           ++LFVL++GW  +L  L  S+
Sbjct: 196 MLLFVLINGWTRLLDGLFYSY 216