Pairwise Alignments

Query, 260 a.a., flagellar type III secretion system protein FliR from Vibrio cholerae E7946 ATCC 55056

Subject, 251 a.a., hypothetical protein from Xanthobacter sp. DMC5

 Score = 77.4 bits (189), Expect = 3e-19
 Identities = 55/229 (24%), Positives = 105/229 (45%), Gaps = 4/229 (1%)

Query: 16  FWPYTRIAAMLMVMTVTGARFVPARVRLYLGLALTFAVMPAIPAVPSDIALLSLQG---F 72
           F  + R+   LM+M   G R +P RVR++L LAL+FA +P +    +     +  G   F
Sbjct: 13  FLVFCRVGGALMLMPGVGGRHIPMRVRVFLALALSFAFLPLVLDQVAPKVRTAGSGDFVF 72

Query: 73  MITFEQIVIGVAMGMVTQFLVQIFVMLGQILGMQSSLGFASMVDPANGQNTPLLGQLFML 132
           MI  E ++ G+ +G++ +  V         +     +           +  P+L  L + 
Sbjct: 73  MIAGE-LLTGLLIGLLARLYVTALQFATSFIAQAVGVSPMPGASVEEDEQLPILATLIVF 131

Query: 133 LATLFFLVSDGHLKMIQLVVFSFKSLPIGSGSLTTVDFRELALWLGIMFKASLAVSLSGI 192
            AT    ++D HL++++ +V SF  +P GS         +L   +  +F  ++ +    I
Sbjct: 132 SATALIFIADLHLELVKGLVDSFARVPPGSLLAVRPALVDLVDQMSAVFLVAVRLCGPFI 191

Query: 193 IALLTVNLSFGVMTRAAPQLNIFSLGFSFALLVGLLLCWYIVHGLYTHY 241
           +  + VN + G++ +  PQ+ ++ +   F    GLLL +  V  L + +
Sbjct: 192 LYSVMVNFAVGLINKFTPQIPVYFVATPFVTAGGLLLLYVSVEPLLSAF 240