Pairwise Alignments

Query, 260 a.a., flagellar type III secretion system protein FliR from Vibrio cholerae E7946 ATCC 55056

Subject, 261 a.a., flagellar biosynthesis protein FliR from Pseudomonas simiae WCS417

 Score =  191 bits (485), Expect = 1e-53
 Identities = 101/231 (43%), Positives = 143/231 (61%), Gaps = 2/231 (0%)

Query: 11  FIANYFWPYTRIAAMLMVMTVTGARFVPARVRLYLGLALTFAVMPAIPAVPSDIALLSLQ 70
           ++A++  P  R+ AMLM M V G   VP RVRLY  +A+T  ++P +P +P  +  + L 
Sbjct: 15  WVASFILPMFRVTAMLMAMPVFGTTLVPRRVRLYFAVAITVVIVPGLPPMPP-VNAIDLS 73

Query: 71  GFMITFEQIVIGVAMGMVTQFLVQIFVMLGQILGMQSSLGFASMVDPANGQNTPLLGQLF 130
             ++  EQI+IG  MG       Q FV+ GQI+ +Q  +GFASMVDP NG +  ++GQ  
Sbjct: 74  ALLLIAEQILIGALMGFSLTLFFQAFVVAGQIISIQMGMGFASMVDPTNGVSAAVIGQFL 133

Query: 131 MLLATLFFLVSDGHLKMIQLVVFSFKSLPIGSGSLTTVDFRELALWLGIMFKASLAVSLS 190
            +L TL FL  +GHL   +++  SF +LP+GSG L    F E+   LG +F ASL + L 
Sbjct: 134 TMLVTLLFLAMNGHLVAFEVMTESFTTLPVGSG-LVVNHFWEVVGRLGWVFGASLLLVLP 192

Query: 191 GIIALLTVNLSFGVMTRAAPQLNIFSLGFSFALLVGLLLCWYIVHGLYTHY 241
            I ALL VN++FGVMTRAAPQLNIFS+GF   L++G+ + W  +  +   Y
Sbjct: 193 AITALLVVNIAFGVMTRAAPQLNIFSIGFPLTLVLGMGIFWVGLADILNQY 243