Pairwise Alignments

Query, 260 a.a., flagellar type III secretion system protein FliR from Vibrio cholerae E7946 ATCC 55056

Subject, 238 a.a., Flagellar biosynthesis protein FliR from Variovorax sp. SCN45

 Score = 81.6 bits (200), Expect = 1e-20
 Identities = 53/211 (25%), Positives = 101/211 (47%), Gaps = 9/211 (4%)

Query: 27  MVMTVTGARFVPARVRLYLGLALTFAVMPAIPAV---PSDIALLSLQGFMITFEQIVIGV 83
           M+  V  A  +PA VR+ L L+L+ A+  A+ +    P +  +L          ++V+G 
Sbjct: 1   MMTPVLYAVPLPATVRVLLVLSLSVALASALTSAAGAPVEWRVL----LPAALSELVLGA 56

Query: 84  AMGMVTQFLVQIFVMLGQILGMQSSLGFASMVDPANGQNTPLLGQLFMLLATLFFLVSDG 143
            +G+        F + GQ+L +Q   G A ++DP   +  P+L   F  +A L F + +G
Sbjct: 57  VLGLGILLAFGAFTVAGQMLDVQLGFGIAQIMDPVTRRPVPILTTAFAYVAVLVFFLVNG 116

Query: 144 HLKMIQLVVFSFKSLPIGSGSLTTVDFRELALWLGIMFKASLAVSLSGIIALLTVNLSFG 203
           H  +++ + +S +  P+G+          +      +F    A++   +  +L    + G
Sbjct: 117 HHALLRGIAYSVERFPVGAPWSLAQAVEPVLKQAAGLFSLGFALAAPVVFCILLAEFALG 176

Query: 204 VMTRAAPQLNIFSLGFSFALLVGL--LLCWY 232
           V+ R  PQ+N+F++G    ++VGL  L  W+
Sbjct: 177 VVGRNLPQMNMFTMGIPVKIIVGLVALSLWF 207