Pairwise Alignments

Query, 260 a.a., flagellar type III secretion system protein FliR from Vibrio cholerae E7946 ATCC 55056

Subject, 265 a.a., Flagellar biosynthesis protein FliR from Variovorax sp. SCN45

 Score =  147 bits (372), Expect = 2e-40
 Identities = 77/227 (33%), Positives = 131/227 (57%), Gaps = 1/227 (0%)

Query: 11  FIANYFWPYTRIAAMLMVMTVTGARFVPARVRLYLGLALTFAVMPAIPAVPSDIALLSLQ 70
           ++  + WP+ R+ A++    +    +VP +V++ +   LT  + P I   P+ + ++S  
Sbjct: 16  WVVAFLWPFVRMLALVSTAPIFAESWVPRQVKVGIAAMLTLVISPLIGPFPA-VPVVSAG 74

Query: 71  GFMITFEQIVIGVAMGMVTQFLVQIFVMLGQILGMQSSLGFASMVDPANGQNTPLLGQLF 130
           G  I  +Q++IGVAMG   + +    +  G+ +G+Q  L FAS  DP +  +T ++ +L 
Sbjct: 75  GLWIIVQQVLIGVAMGFAMRMVFTAVLAAGEYIGLQMGLSFASFYDPMSRGSTMVVSRLL 134

Query: 131 MLLATLFFLVSDGHLKMIQLVVFSFKSLPIGSGSLTTVDFRELALWLGIMFKASLAVSLS 190
            +LATL FL  DGHL ++  +  SF++LPI  G L    +  L L  G +F + L +SL 
Sbjct: 135 NMLATLIFLALDGHLLIVNALAESFQTLPISDGPLVAGGWMFLVLAGGEIFASGLLLSLP 194

Query: 191 GIIALLTVNLSFGVMTRAAPQLNIFSLGFSFALLVGLLLCWYIVHGL 237
            I ALLT+NL+ G++ RA+PQ +IF++GF   LL G+ +   ++  L
Sbjct: 195 LITALLTLNLAMGILNRASPQFSIFAVGFPLTLLAGIFMLQLLMPNL 241