Pairwise Alignments

Query, 260 a.a., flagellar type III secretion system protein FliR from Vibrio cholerae E7946 ATCC 55056

Subject, 260 a.a., Flagellar biosynthesis protein FliR from Sphingobium sp. HT1-2

 Score =  123 bits (309), Expect = 3e-33
 Identities = 68/209 (32%), Positives = 112/209 (53%)

Query: 21  RIAAMLMVMTVTGARFVPARVRLYLGLALTFAVMPAIPAVPSDIALLSLQGFMITFEQIV 80
           R  A  +   V GA  +P ++RL L LAL  A + ++        + S +G M+   +++
Sbjct: 22  RPGAAFLAAPVFGAPAMPLQLRLILSLALGMAALNSVTIQLPHDGVASFEGVMLVAGEVL 81

Query: 81  IGVAMGMVTQFLVQIFVMLGQILGMQSSLGFASMVDPANGQNTPLLGQLFMLLATLFFLV 140
            G+AMG   Q       + G+ +     LGFA+MVDP +GQ T  +GQ   +L+T   L 
Sbjct: 82  TGLAMGFAVQIGYSAAFVAGEAIANTMGLGFAAMVDPGSGQGTQAVGQFLSILSTFLLLA 141

Query: 141 SDGHLKMIQLVVFSFKSLPIGSGSLTTVDFRELALWLGIMFKASLAVSLSGIIALLTVNL 200
            DGHL ++  VV S+K+LP G+  L+      +  + G +  A + ++L    AL+ V +
Sbjct: 142 MDGHLLLVSFVVQSYKALPPGAAMLSNDAVWHMIQFGGSLLGAGVTIALPVGFALVLVQI 201

Query: 201 SFGVMTRAAPQLNIFSLGFSFALLVGLLL 229
             G++ R AP LN+F++G   A++ GL+L
Sbjct: 202 VMGMLARTAPALNLFAVGMPMAVMAGLVL 230