Pairwise Alignments

Query, 260 a.a., flagellar type III secretion system protein FliR from Vibrio cholerae E7946 ATCC 55056

Subject, 258 a.a., Flagellar biosynthetic protein fliR from Pseudomonas putida KT2440

 Score =  201 bits (512), Expect = 1e-56
 Identities = 104/248 (41%), Positives = 160/248 (64%), Gaps = 2/248 (0%)

Query: 11  FIANYFWPYTRIAAMLMVMTVTGARFVPARVRLYLGLALTFAVMPAIPAVPSDIALLSLQ 70
           ++A +  P  R+ A+LM M + G R +PAR+RLY+ +A+T  ++PA+P +P +   LSL+
Sbjct: 12  WVATFILPLFRVTAVLMTMPIFGTRMLPARIRLYVAVAVTVVIVPALPPLP-EFDPLSLR 70

Query: 71  GFMITFEQIVIGVAMGMVTQFLVQIFVMLGQILGMQSSLGFASMVDPANGQNTPLLGQLF 130
           G ++  EQI++G   G+  Q L Q FV+ GQI+ +Q  + FASMVDPANG N  ++ Q  
Sbjct: 71  GMLLCAEQIIVGALFGLALQLLFQAFVVAGQIVAVQMGMAFASMVDPANGVNVTVISQFM 130

Query: 131 MLLATLFFLVSDGHLKMIQLVVFSFKSLPIGSGSLTTVDFRELALWLGIMFKASLAVSLS 190
            +L ++ FL+ +GHL + +++  SF +LP+GS +L    F ELA  +G +F A L + L 
Sbjct: 131 TMLVSVLFLLMNGHLVVFEVLTESFTTLPVGS-ALVVNHFWELAGRMGWVFGAGLLLILP 189

Query: 191 GIIALLTVNLSFGVMTRAAPQLNIFSLGFSFALLVGLLLCWYIVHGLYTHYDIYWQEAEE 250
            I ALL VN++FGVMTRAAPQLNIFS+GF   L++G+ + W  +  + +HY     E  +
Sbjct: 190 VIAALLVVNIAFGVMTRAAPQLNIFSIGFPLTLVMGMFIFWVGLADVLSHYQALASETLQ 249

Query: 251 QVCRLIRL 258
            +  L R+
Sbjct: 250 WLRELARV 257