Pairwise Alignments

Query, 260 a.a., flagellar type III secretion system protein FliR from Vibrio cholerae E7946 ATCC 55056

Subject, 254 a.a., flagellar type III secretion system protein FliR from Magnetospirillum magneticum AMB-1

 Score = 90.1 bits (222), Expect = 4e-23
 Identities = 66/226 (29%), Positives = 103/226 (45%), Gaps = 16/226 (7%)

Query: 12  IANYFWPYTRIAAMLMVMTVTGARFVPARVRLYLGLALTFAVMPAI----PAVPSDIALL 67
           I  +F  +TRI A LM+    G   V  R+RL L L++ F ++P +    PAVP  +  +
Sbjct: 10  IFRFFLVFTRIGAALMLFPGLGGSLVSTRIRLLLALSVAFVMLPVVGASFPAVPRSVGGM 69

Query: 68  SLQGFMITFEQIVIGVAMGMVTQFLVQIFVMLGQILGMQSSLGFASMVDPANGQNTPLLG 127
            L      F + V+GV +G V  F++    M G ++G Q+ L  A   DP   Q + LL 
Sbjct: 70  LLA----VFGEAVVGVYLGTVIMFIMSTLNMAGSMIGYQTGLTNAFSFDPIAQQQSQLLT 125

Query: 128 QLFMLLATLFFLVSDGHLKMIQLVVFSFKSLPIGSGSLTTVDFRELALWLGIMFKASLAV 187
                +  +    +D H  M Q V  S+   P G      + F + A  LG +   +  V
Sbjct: 126 GFLANIGLVAVFATDMHHLMFQAVFESYYLFPPGQ----PLQFGDYAETLGHLATDTFKV 181

Query: 188 SLSGIIALLTVNLSF----GVMTRAAPQLNIFSLGFSFALLVGLLL 229
                  L+   L F    G+++R  PQL +F +G    ++VG+ L
Sbjct: 182 GTQFAAPLVVFGLVFYTGLGLLSRLVPQLQVFFVGMPVQVMVGMWL 227