Pairwise Alignments

Query, 260 a.a., flagellar type III secretion system protein FliR from Vibrio cholerae E7946 ATCC 55056

Subject, 261 a.a., flagellar biosynthesis protein R (NCBI) from Escherichia coli BW25113

 Score =  160 bits (405), Expect = 2e-44
 Identities = 86/221 (38%), Positives = 132/221 (59%), Gaps = 2/221 (0%)

Query: 9   LDFIANYFWPYTRIAAMLMVMTVTGARFVPARVRLYLGLALTFAVMPAIPAVPSDIALLS 68
           L ++  YFWP  R+ A++    +   R VP RV+L L + +TFA+ P++PA  +D+ + S
Sbjct: 10  LSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA--NDVPVFS 67

Query: 69  LQGFMITFEQIVIGVAMGMVTQFLVQIFVMLGQILGMQSSLGFASMVDPANGQNTPLLGQ 128
                +  +QI+IG+A+G   QF        G+I+G+Q  L FA+ VDPA+  N P+L +
Sbjct: 68  FFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLAR 127

Query: 129 LFMLLATLFFLVSDGHLKMIQLVVFSFKSLPIGSGSLTTVDFRELALWLGIMFKASLAVS 188
           +  +LA L FL  +GHL +I L+V +F +LPIG   L +  F  L     ++F   L ++
Sbjct: 128 IMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLA 187

Query: 189 LSGIIALLTVNLSFGVMTRAAPQLNIFSLGFSFALLVGLLL 229
           L  I  LLT+NL+ G++ R APQL+IF +GF   L VG+ L
Sbjct: 188 LPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISL 228