Pairwise Alignments

Query, 260 a.a., flagellar type III secretion system protein FliR from Vibrio cholerae E7946 ATCC 55056

Subject, 261 a.a., flagellar type III secretion system protein FliR from Escherichia coli ECRC62

 Score =  162 bits (409), Expect = 9e-45
 Identities = 87/229 (37%), Positives = 136/229 (59%), Gaps = 2/229 (0%)

Query: 1   MEYPASVVLDFIANYFWPYTRIAAMLMVMTVTGARFVPARVRLYLGLALTFAVMPAIPAV 60
           M+  +   L +++ YFWP  R+ A++    +   R VP RV+L L + +TFA+ P++PA 
Sbjct: 2   MQVTSDQWLSWLSLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA- 60

Query: 61  PSDIALLSLQGFMITFEQIVIGVAMGMVTQFLVQIFVMLGQILGMQSSLGFASMVDPANG 120
            +D+ + S     +  +QI+IG+A+G   QF        G+I+G+Q  L FA+ VDPA+ 
Sbjct: 61  -NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119

Query: 121 QNTPLLGQLFMLLATLFFLVSDGHLKMIQLVVFSFKSLPIGSGSLTTVDFRELALWLGIM 180
            N P+L ++  +LA L FL  +GHL +I L+V +F +LPIG   L +  F  L     ++
Sbjct: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179

Query: 181 FKASLAVSLSGIIALLTVNLSFGVMTRAAPQLNIFSLGFSFALLVGLLL 229
           F   L ++L  I  LLT+NL+ G++ R APQL+IF +GF   L VG+ L
Sbjct: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISL 228