Pairwise Alignments

Query, 260 a.a., flagellar type III secretion system protein FliR from Vibrio cholerae E7946 ATCC 55056

Subject, 261 a.a., flagellar type III secretion system protein FliR from Escherichia coli ECRC101

 Score =  161 bits (408), Expect = 1e-44
 Identities = 86/221 (38%), Positives = 133/221 (60%), Gaps = 2/221 (0%)

Query: 9   LDFIANYFWPYTRIAAMLMVMTVTGARFVPARVRLYLGLALTFAVMPAIPAVPSDIALLS 68
           L +++ YFWP  R+ A++    +   R VP RV+L L + +TFA+ P++PA  +D+ + S
Sbjct: 10  LSWLSLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA--NDVPVFS 67

Query: 69  LQGFMITFEQIVIGVAMGMVTQFLVQIFVMLGQILGMQSSLGFASMVDPANGQNTPLLGQ 128
                +  +QI+IG+A+G   QF        G+I+G+Q  L FA+ VDPA+  N P+L +
Sbjct: 68  FFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLAR 127

Query: 129 LFMLLATLFFLVSDGHLKMIQLVVFSFKSLPIGSGSLTTVDFRELALWLGIMFKASLAVS 188
           +  +LA L FL  +GHL +I L+V +F +LPIG   L +  F  L     ++F   L ++
Sbjct: 128 IMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLA 187

Query: 189 LSGIIALLTVNLSFGVMTRAAPQLNIFSLGFSFALLVGLLL 229
           L  I  LLT+NL+ G++ R APQL+IF +GF   L VG+ L
Sbjct: 188 LPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISL 228