Pairwise Alignments

Query, 260 a.a., flagellar type III secretion system protein FliR from Vibrio cholerae E7946 ATCC 55056

Subject, 259 a.a., Flagellar biosynthetic protein FliR from Alteromonas macleodii MIT1002

 Score =  235 bits (599), Expect = 8e-67
 Identities = 111/258 (43%), Positives = 172/258 (66%), Gaps = 1/258 (0%)

Query: 1   MEYPASVVLDFIANYFWPYTRIAAMLMVMTVTGARFVPARVRLYLGLALTFAVMPAIPAV 60
           ME   + +  F+A+   P+ RI+ + + M    A+ +P +VR  LG+ LT  +MP +P  
Sbjct: 1   MEVELATINQFLADMLLPFMRISGLFVAMIGLSAKSIPPQVRALLGIMLTLIIMPVVPPS 60

Query: 61  PSDIALLSLQGFMITFEQIVIGVAMGMVTQFLVQIFVMLGQILGMQSSLGFASMVDPANG 120
           P +  L+ +  F+I  +Q++IG+A+G ++  ++  FV+ GQI+ MQ+ LGFAS+VDP NG
Sbjct: 61  PIE-NLVDVGTFLIVIQQLLIGIAIGFISMMVLNTFVLAGQIIAMQTGLGFASIVDPVNG 119

Query: 121 QNTPLLGQLFMLLATLFFLVSDGHLKMIQLVVFSFKSLPIGSGSLTTVDFRELALWLGIM 180
            N P +GQ +++LATL F   DGHL MIQ++V SF++ PIG    T   FR++A W G M
Sbjct: 120 INVPAVGQFYLILATLLFWTLDGHLSMIQMIVMSFEAFPIGEAWWTGEQFRDIAHWAGWM 179

Query: 181 FKASLAVSLSGIIALLTVNLSFGVMTRAAPQLNIFSLGFSFALLVGLLLCWYIVHGLYTH 240
           F +++ +SL+ I++LL VNL+FGVMT+AAPQLNIFS+GFS A ++GLL+ W  +     H
Sbjct: 180 FISAVTLSLAPIVSLLIVNLAFGVMTKAAPQLNIFSIGFSIAQVMGLLIIWITLDNFTAH 239

Query: 241 YDIYWQEAEEQVCRLIRL 258
           ++  W  AE+ +C L+ +
Sbjct: 240 FETQWFRAEQFMCELLNI 257