Pairwise Alignments

Query, 260 a.a., flagellar type III secretion system protein FliR from Vibrio cholerae E7946 ATCC 55056

Subject, 240 a.a., flagellar biosynthetic protein FLIR from Agrobacterium fabrum C58

 Score = 63.9 bits (154), Expect = 3e-15
 Identities = 49/232 (21%), Positives = 101/232 (43%), Gaps = 10/232 (4%)

Query: 16  FWPYTRIAAMLMVMTVTGARFVPARVRLYLGLALTFAVMPAIPAVPSDIALLSLQGFMI- 74
           F    RI A  M M    +  +  ++R+ L +A++ A++P +          + QG ++ 
Sbjct: 2   FLAICRIGACFMTMPGFSSSRISPQIRMLLCVAVSMALLPVLWDTIYPKVSGASQGAVVG 61

Query: 75  -TFEQIVIGVAMGMVTQFLVQIFVMLGQILGMQSSLGFASMVDPANGQNTPLLGQLFMLL 133
             F +++IG   G++ +F    F   G ++G    L      DP        +       
Sbjct: 62  LIFSEVLIGAMYGLIARFYTLGFQFTGALIGASIGLSAPGGADPIEDVQENQIANFITFG 121

Query: 134 ATLFFLVSDGHLKMIQLVVFSFKSLPIGSGSLTTVDFRELALWLGIMFKASLAVSL---- 189
             L   + D H  +++ +V S+ + P+G+     +  +++ + L    +AS ++ L    
Sbjct: 122 GLLVLFMMDFHHIVLKALVDSYSATPVGA----LISGQKMLITLTDTLRASFSIMLRLAS 177

Query: 190 SGIIALLTVNLSFGVMTRAAPQLNIFSLGFSFALLVGLLLCWYIVHGLYTHY 241
             +I  L  N++ G++ + APQ+ +F +   F L  GL + +  V  L   +
Sbjct: 178 PFVIYGLMFNVAVGLINKLAPQIPVFFISTPFVLAGGLFMLYLSVAALIRQF 229