Pairwise Alignments

Query, 376 a.a., flagellar biosynthesis protein FlhB from Vibrio cholerae E7946 ATCC 55056

Subject, 350 a.a., Type III secretion inner membrane protein (YscU,SpaS,EscU,HrcU,SsaU, homologous to flagellar export components) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  141 bits (356), Expect = 2e-38
 Identities = 109/353 (30%), Positives = 177/353 (50%), Gaps = 13/353 (3%)

Query: 8   ERTEEATPRRLQQAKEKGQVARSKELASVSVLVVGAVSLMWFGEILAKGLMVAMQRLFEL 67
           E+TE+ TP+RL  A++KG VA +K+ AS ++L+      + F    A  L  AM  L E 
Sbjct: 3   EKTEKPTPKRLVDARKKGDVAHAKD-ASKALLIWACAGYLLFS---AGQLTDAMLFLIEW 58

Query: 68  SREEIFDLGKLFDIIGG----SLVNLLLPLLMILSTLFIAALIGAAGVGGISFSAEAAMP 123
           +       G   D++      +L  L L LL  ++ + + ++ G     G  F+ E    
Sbjct: 59  AGAHAN--GPFRDVLAAFLRLALKELGLALLPWMAIVIVLSIFGELVTAGPVFAPEKVKF 116

Query: 124 KLSKMNPLSGLKRMFGMQSWVELLKSILKVLLVSGVAFYLIEASQKDLFQLSLDVYPQNI 183
              K++ ++ +K +F  ++ +E LKS++KVL ++G+ + L+  +   L  L+     Q +
Sbjct: 117 NFQKLDVVANVKNLFSARNLIEALKSVVKVLALTGIVWKLVHDNLGTLMLLAGSGI-QPV 175

Query: 184 FHALDILLNFVLLISCSLLVVVA-IDIPFQIWQHAEQLKMTKQEVKDEYKDTEGKPEVKG 242
                +L+  +LL +  +  V+A  D+  Q    + Q  MTK EVK E K+++G PE+KG
Sbjct: 176 TTGFGLLIKSLLLATAFVFTVIAGFDMLIQRKLFSRQQMMTKDEVKRERKESDGAPEIKG 235

Query: 243 RIRMLQREAAQRRMMAALPQADVIITNPEHFSVALRYKQNTDKAPVVIAKGVDHMALKIR 302
             R L RE  Q        +  +++TNP H +VAL Y+      P+V+AKG    A  I 
Sbjct: 236 ERRKLHREIVQGGG-GGKRKPSLVVTNPTHLAVALLYEHGETPLPLVVAKGAGLQAQAIV 294

Query: 303 EIAREYDIAIVPAPPLARALYHTTELEQQIPDGLFVAVAQVLAFVFQLKQYRR 355
             AR   I I+   PLARAL    E++  +P+ LF  V  VL  V ++    R
Sbjct: 295 RDARVDGIPIIQHIPLARALVAQVEVDDPVPEHLFELVIDVLKAVKEVAPAER 347