Pairwise Alignments

Query, 376 a.a., flagellar biosynthesis protein FlhB from Vibrio cholerae E7946 ATCC 55056

Subject, 356 a.a., Type III secretion inner membrane protein (YscU,SpaS,EscU,HrcU,SsaU, homologous to flagellar export components) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  109 bits (273), Expect = 1e-28
 Identities = 80/321 (24%), Positives = 160/321 (49%), Gaps = 15/321 (4%)

Query: 9   RTEEATPRRLQQAKEKGQVARSKELASVSVLVVGAVSLMWFGEILAKGLMVAMQRLFELS 68
           +TE+ T +RL+ + +KGQ  +SK+L  ++ L +G ++ +     ++ G       + ++ 
Sbjct: 5   KTEKPTKKRLEDSAKKGQSFKSKDLI-IACLTLGGIAYL-----VSYGSFNEFMGIIKII 58

Query: 69  REEIFDLGKL---FDIIGGSLVNLLLPLLMILSTLFIAALIGAAGVGGISFSAEAAMPKL 125
             + FD         + G  L  L+  +L+ L    + AL+ A    G   + EA  P L
Sbjct: 59  IADNFDQSMADYSLAVFGIGLKYLIPFMLLCLVCSALPALLQA----GFVLATEALKPNL 114

Query: 126 SKMNPLSGLKRMFGMQSWVELLKSILKVLLVSGVAFYLIEASQKDLF-QLSLDVYPQNIF 184
           S +NP+ G K++F M++  + +K++L +      A    +  + ++F QL+ ++    + 
Sbjct: 115 SALNPVEGAKKLFSMRTVKDTVKTLLYLSSFVVAAIICWKKYKVEIFSQLNGNIVGIAVI 174

Query: 185 HALDILLNFVLLISCSLLVVVAIDIPFQIWQHAEQLKMTKQEVKDEYKDTEGKPEVKGRI 244
              ++LL  VL      L+V+ +D   + +   + +KM K+EVK E K+ EG PEVK + 
Sbjct: 175 WR-ELLLALVLTCLACALIVLLLDAIAEYFLTMKDMKMDKEEVKREMKEQEGNPEVKSKR 233

Query: 245 RMLQREAAQRRMMAALPQADVIITNPEHFSVALRYKQNTDKAPVVIAKGVDHMALKIREI 304
           R +  E    ++ + +  + +I+ NP H ++ + +K      P++     +  AL +R  
Sbjct: 234 REVHMEILSEQVKSDIENSRLIVANPTHITIGIYFKPELMPIPMISVYETNQRALAVRAY 293

Query: 305 AREYDIAIVPAPPLARALYHT 325
           A +  + ++    LAR+L+ T
Sbjct: 294 AEKVGVPVIVDIKLARSLFKT 314