Pairwise Alignments

Query, 674 a.a., bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC from Vibrio cholerae E7946 ATCC 55056

Subject, 666 a.a., FAD-dependent cmnm(5)s(2)U34 oxidoreductase from Pseudomonas simiae WCS417

 Score =  400 bits (1028), Expect = e-115
 Identities = 263/687 (38%), Positives = 364/687 (52%), Gaps = 41/687 (5%)

Query: 4   MSSISHAQLGWNDAGTPVSDQFDDVYFSNVNGLAETRYVFLEQNHLPQRWHN-DDQRRFV 62
           M+ ++HAQL W+D G P S  FDDVYFS+ +GL ETRYVFLEQN L +R+       R V
Sbjct: 1   MNPVTHAQLDWDDQGRPRSRVFDDVYFSDKSGLEETRYVFLEQNRLQERFAALPVGGRLV 60

Query: 63  IAETGFGTGLNFLAVWQAFVAFREANPDAKLKELHFISFEKYPLSKSDLIQAHQAWPELA 122
           I ETGFGTGLNFL  WQ F     A        LHF+S EKYPLS++DL +A   WPEL 
Sbjct: 61  IGETGFGTGLNFLCAWQLFEQHAVAGA-----HLHFVSVEKYPLSRADLQRALALWPELQ 115

Query: 123 QFAQKLHKHYPLAIPECQRIVLNDGLVTLDLWFGDIKDCLPKVATQEQGLVDAWFLDGFA 182
             A +L   Y       QR+VL++G VTL L  GD  + LP++  Q    VDAWFLDGFA
Sbjct: 116 PLAAQLLAQYIAIHQGFQRLVLDNGRVTLTLLIGDALEQLPQLDAQ----VDAWFLDGFA 171

Query: 183 PSKNPEMWNQNLFAGMAKLAKHGCTCATFTSAGFVRRGLIDAGFAMKKVKGFGTKREMIA 242
           P+KNPEMW   LFA +A+LA  G T +TFTS G+VRR +  AGF MK+  G G K E++ 
Sbjct: 172 PAKNPEMWTAELFAELARLAAPGSTISTFTSTGWVRRLINAAGFKMKRTPGIGHKWEILR 231

Query: 243 GSL---SEKVPYTNIAPEF--RFEATHGLQEVAIIGGGIASATLATTLARRGVAVTLYCA 297
           G         P  + A  +  R  A  G +   +IGGG+A    A++LA RG  V+L   
Sbjct: 232 GEFLGWPADAPAPSAAKPWFARPAALAGERHALVIGGGLAGCATASSLAARGWQVSLLER 291

Query: 298 DEKPAQGASGNRQGAVYPLLSGDHNAVSRVFAPAFLFARQWIEQAAEQINFDHDWCGVTQ 357
               AQ ASGN QG +Y  LS    A+S++    F   R+ +E     +  D D CGV Q
Sbjct: 292 HASLAQEASGNPQGVLYLKLSAHGTALSQLIVAGFGHTRRLLEHLHRGV--DWDGCGVLQ 349

Query: 358 LMWDEKATDKLKSMLEGNFPTQLVHGLSAEQTNQQVGVPVDKASVHYPLGGWLSPAELTQ 417
           L ++ K  ++ ++ L   F   L+H L  +Q  QQ G+ + +  + +P GGW+ P  L Q
Sbjct: 350 LAFNAKEAER-QAQLAHAFAPDLLHLLDRDQAQQQAGIRLAQGGLFFPEGGWVHPPALCQ 408

Query: 418 GLIHLLEQQGKLTAHYQTPIDALTWQPETQLWQLRSGD-TLMSHQCVVIASGHQFDSLSQ 476
                     K+  H+    +AL        WQ R GD  L S   VV+A        + 
Sbjct: 409 W--QAAHPLIKVLTHH----EALELHRVDDQWQARDGDRVLASATVVVLAGAADIKRFAL 462

Query: 477 TAELPLGKVKGQVSHIPTTETLSKINSVLCYDGYMTPVSQQNGYHCIGASYDRQHLDATF 536
           +A+LPL +++GQ++ +  T   + + +V+C +GY+ P   + G H +GAS+D  + D T 
Sbjct: 463 SADLPLKRIRGQITRLAQTTASAALATVVCAEGYVAPA--RRGEHTLGASFDFNNDDLT- 519

Query: 537 DPQAQHENAQKLIHCLPEQTWPLEVDVSGNQ-------SRQGVRCVSRDHLPFVGNVGEF 589
              A+H     ++  + E    L   +  NQ        R   RC S D+LP VG + + 
Sbjct: 520 PTVAEHAGNLAMLREISED---LVQRLGANQLVPEQLEGRAAFRCTSPDYLPIVGPLADT 576

Query: 590 SKITEQYRDL---AQQHQAEPIALYPQLYALVGLGSRGLSSAPLMAELLASQMCGDPMPL 646
                 Y  L   A+Q    P    P +Y   G GSRGL +APL  ELLA+ +  +P+P+
Sbjct: 577 EAFQRTYAVLSKDARQVPDMPCPWLPGVYINSGHGSRGLITAPLCGELLAAWLNDEPLPV 636

Query: 647 GVDLLEQLHPSRMWVRKLRKGKALTQK 673
              + E  HP+R  +R L +GK+   K
Sbjct: 637 PASVAEACHPNRFALRALVRGKSTVNK 663